SigFidelity {vegsoup} | R Documentation |
Experimental.
## S4 method for signature 'VegsoupPartition' SigFidelity(obj, mode = 1, nperm = 999, alternative = "two.sided", verbose = TRUE)
obj |
|
mode |
type of analysis. See ‘Details’. |
nperm |
number of permutations |
alternative |
alternative hypthersis. |
verbose |
more output. |
mode = 0
looks for species whose abundance is significantly higher in one of the groups. mode = 1
looks for species whose abundance is significantly higher in sites belonging to one group as opposed to sites not belonging to it.
An object of class 'VegsoupPartitionFidelity'
Adapted from function signassoc()
of package indicspecies by Miquel De Cáceres Ainsa.