Transformation Models with Mixed Effects


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Documentation for package ‘tramME’ version 0.0.3

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.check_coef Check the validity of a vector of coefficients
.check_varcov Check the validity of a vector of coefficients
.dummy_ctm Dummy ctm model with random effects as offsets
.mlt_data Extract information from an mlt model
.model_name Create name for a specific tramME model
.nobars Remove random effects terms
.parallel_default Boilerplate parallel-handling function, copied from 'lme4'
.paridx Match parameters with parameter groups and indeces
.renames Return names for random effects parameters
.re_data Create RE data
.re_format Reshape unformatted random effects vectors
.re_size Calculates the size of the random effect vector implied by the model and the data
.sim_re Simulates random effects vector from a tramME object
.subbars My own version of lme4::subbar
.tramME General ME tram model
anova.tramME Comparison of nested tramME models.
BoxCoxME ME version of tram::BoxCox
coef.LmME Extract the coefficients of the fixed effects terms of an LmME model.
coef.tramME Extract the coefficients of the fixed effects terms.
coef<-.tramME Set coefficients of a tramME model.
ColrME ME version of tram::Colr
confint.LmME Confidence intervals for LmME model parameters
confint.tramME Confidence intervals for tramME model parameters
CoxphME ME version of tram::Coxph
LehmannME ME version of tram::Lehmann
LmME ME version of tram::Lm
logLik.tramME Get the log-likelihood of the model
plot.trafo.tramME Plotting method for 'trafo.tramME' objects
plot.tramME Plotting method for tramME objects
PolrME ME version of tram::Polr
predict.tramME Predict method for tramME objects
print.anova.tramME Printing 'anova.tramME' table
print.simulate.tramME Print method for 'simulate.tramME' objects
print.summary.tramME Print method for tramME model summary
print.tramME Print tramME model
print.VarCorr.tramME Print method for the variance-correlation parameters of a tramME object
ranef Extract the conditional modes and conditional variances of random effects
ranef.LmME Extract the conditional modes of random effects of an LmME model
ranef.tramME Extract the conditional modes and conditional variances of random effects
refit.tramME Refit the model with a new response vector
sigma.LmME Extract the SD of the error term of an LmME model.
simulate.tramME Simulate outcome variable from an estimated model
summary.tramME Summary method for tramME model
SurvregME ME version of tram::Survreg
trafo Generic method for extracting baseline transformations
trafo.tramME Get the baseline transformation function and its confidence interval
VarCorr Variances and correlation matrices of random effects
VarCorr.LmME Variances and correlation matrices of random effects of an LmME object
VarCorr.tramME Variances and correlation matrices of random effects
varcov Generic method for 'varcov'
varcov.tramME Extract the variance-covariance matrix of the random effects
varcov<- Generic method for '"varcov<-"'
varcov<-.tramME Set the values of the random effects covariance matrices of a tramME model.
variable.names.tramME Return variable names.
vcov.LmME Get the variance-covariance matrix of the parameters of an LmME model
vcov.tramME Calculate the variance-covariance matrix of the parameters