getDeadLocations {qfa} | R Documentation |
Given Colonyzer quantifications of SGA plates in 1536 format, locate dead cultures and report the 384-format locations of those cultures for stripping.
getDeadLocations(SGAFile,SGAExpt,CutoffFrac=0.0025)
SGAFile |
The Colonyzer output for the final SGA plates. These are 1536 format plates, and the Colonyzer file should be a .dat tab delimited text file. |
SGAExpt |
Experiment description file for the SGA, linking barcode with plate number. |
CutoffFrac |
Optional argument for specifying the minimum value for Growth (normalised IOD) corresponding to detection of cells on 1536 plate. |
A data frame containing columns ROW384, COLUMN384, REP384 (repeat or quadrant identifier) and PLATE which will be useful for stripping.