Multi-Layer Group-Lasso

Documentation for package ‘MLGL’ version 0.6.1

Help Pages

MLGL-package	MLGL
bootstrapHclust	Hierarchical Clustering with distance matrix computed using bootstrap replicates
coef.cv.MLGL	Get coefficients from a 'cv.MLGL' object
coef.MLGL	Get coefficients from a 'MLGL' object
computeGroupSizeWeight	Compute the group size weight vector with an authorized maximal size
cv.MLGL	Multi-Layer Group-Lasso with cross V-fold validation
Ftest	F-test
fullProcess	Full process of MLGL
fullProcess.formula	Full process of MLGL
hierarchicalFDR	Hierachical testing with FDR control
hierarchicalFWER	Hierachical testing with FWER control
HMT	Hierarchical Multiple Testing procedure Apply Hierarchical Multiple Testing procedure on a 'MLGL' object
listToMatrix	Obtain a sparse matrix of the coefficients of the path
MLGL	Multi-Layer Group-Lasso
MLGL.formula	Multi-Layer Group-Lasso
overlapgglasso	Group-lasso with overlapping groups
partialFtest	Partial F-test
plot.cv.MLGL	Plot the cross-validation obtained from 'cv.MLGL' function
plot.fullProcess	Plot the path obtained from 'fullProcess' function
plot.HMT	Plot the path obtained from 'HMT' function
plot.MLGL	Plot the path obtained from 'MLGL' function
plot.stability.MLGL	Plot the stability path obtained from 'stability.MLGL' function
predict.cv.MLGL	Predict fitted values from a 'cv.MLGL' object
predict.MLGL	Predict fitted values from a 'MLGL' object
print.fullProcess	Print Values Print a 'fullProcess' object
print.HMT	Print Values Print a 'HMT' object
print.MLGL	Print Values Print a 'MLGL' object
selFDR	Selection from hierarchical testing with FDR control
selFWER	Selection from hierarchical testing with FWER control
simuBlockGaussian	Simulate multivariate Gaussian samples with block diagonal varaince matrix
stability.MLGL	Stability Selection for Multi-Layer Group-lasso
summary.fullProcess	Object Summaries Summary of a 'fullProcess' object
summary.HMT	Object Summaries Summary of a 'HMT' object
summary.MLGL	Object Summaries Summary of a 'MLGL' object
uniqueGroupHclust	Find all unique groups in 'hclust' results