CALIBERcodelists-package |
Generate ICD, Read and OPCS codelists |
!.selection |
Boolean operators for the S3 selection class |
%&% |
String functions |
%AND% |
Logical operators for selection objects |
%OR% |
Logical operators for selection objects |
&.selection |
Boolean operators for the S3 selection class |
addCategory |
Get and set categories table for the master dictionary |
as.codelist |
codelist: S3 class for lists of Read, OPCS or ICD-10 codes |
as.selection |
selection: S3 class for a list of Read, OPCS and/or ICD-10 terms |
assigncat |
Assign selected terms to a category |
browseCodelist |
Browse a selection, codelist or the master dictionary in a spreadsheet |
browseSelection |
Browse a selection, codelist or the master dictionary in a spreadsheet |
CALIBERcodelists |
Generate ICD, Read and OPCS codelists |
CALIBER_DICT |
The master dictionary containing the current selection of Read, ICD and OPCS terms |
CALIBER_DICTMAPS |
Mapping between OPCS / ICD-10 and Read terms |
CALIBER_GEM |
General Equivalence Mappings from ICD-9-CM to ICD-10-CM and vice versa |
CALIBER_PRODDICT |
CPRD (GPRD) Product dictionary |
codelist |
codelist: S3 class for lists of Read, OPCS or ICD-10 codes |
codematch |
Select ICD10, OPCS or Read codes matching a particular pattern |
compare |
Compare two codelists |
contractCodelist |
Contract and expand ICD-10 codelists according to the hierarchy |
convert |
Convert codelists between ICD-10, Read and OPCS |
decode |
Show term descriptions for ICD, OPCS or Read codes |
dictis |
Which terms are in a particular dictionary |
expandCodelist |
Contract and expand ICD-10 codelists according to the hierarchy |
explode |
Show terms not included in the selection but sharing the first few characters of the Read, OPCS or ICD10 code |
exploreCodes |
Manage codelists and create a new codelist interactively |
export |
Export the codelists to the definitive .csv format or .dta (Stata) format |
export.codelist |
Export the codelists to the definitive .csv format or .dta (Stata) format |
exportall |
Export the codelists to the definitive .csv format or .dta (Stata) format |
getCodelist |
Find and import a codelist from a folder |
getdictionary |
Get and set which dictionary or dictionaries to use |
is.codelist |
codelist: S3 class for lists of Read, OPCS or ICD-10 codes |
is.selection |
selection: S3 class for a list of Read, OPCS and/or ICD-10 terms |
length.selection |
Prints the codes in a selection |
loadDicts |
Script to replace the source dictionaries used by CALIBERcodelists |
medcodeis |
Select Read codes with particular medcode(s) |
merge.codelist |
Merge two codelists |
META |
Metadata for the master dictionary, stored in a data.table |
NOT |
Logical operators for selection objects |
print.codelist |
codelist: S3 class for lists of Read, OPCS or ICD-10 codes |
print.codelistComparison |
Compare two codelists |
print.selection |
Prints the codes in a selection |
process |
Process an R Markdown file |
removeUnusedCategories |
Get and set categories table for the master dictionary |
retrieveCategories |
Get and set categories table for the master dictionary |
saveCategories |
Get and set categories table for the master dictionary |
selection |
selection: S3 class for a list of Read, OPCS and/or ICD-10 terms |
setdictionary |
Get and set which dictionary or dictionaries to use |
setMetadata |
Set metadata for a codelist or the master dictionary |
showhtml |
Show the selected and excluded terms in HTML |
subset.codelist |
codelist: S3 class for lists of Read, OPCS or ICD-10 codes |
termhas |
Select terms which contain a particular string |
|.selection |
Boolean operators for the S3 selection class |