Generate ICD10, Read and OPCS codelists


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Documentation for package ‘CALIBERcodelists’ version 0.2-11

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CALIBERcodelists-package Generate ICD, Read and OPCS codelists
!.selection Boolean operators for the S3 selection class
%&% String functions
%AND% Logical operators for selection objects
%OR% Logical operators for selection objects
&.selection Boolean operators for the S3 selection class
addCategory Get and set categories table for the master dictionary
as.codelist codelist: S3 class for lists of Read, OPCS or ICD-10 codes
as.selection selection: S3 class for a list of Read, OPCS and/or ICD-10 terms
assigncat Assign selected terms to a category
browseCodelist Browse a selection, codelist or the master dictionary in a spreadsheet
browseSelection Browse a selection, codelist or the master dictionary in a spreadsheet
CALIBERcodelists Generate ICD, Read and OPCS codelists
CALIBER_DICT The master dictionary containing the current selection of Read, ICD and OPCS terms
CALIBER_DICTMAPS Mapping between OPCS / ICD-10 and Read terms
CALIBER_GEM General Equivalence Mappings from ICD-9-CM to ICD-10-CM and vice versa
CALIBER_PRODDICT CPRD (GPRD) Product dictionary
codelist codelist: S3 class for lists of Read, OPCS or ICD-10 codes
codematch Select ICD10, OPCS or Read codes matching a particular pattern
compare Compare two codelists
contractCodelist Contract and expand ICD-10 codelists according to the hierarchy
convert Convert codelists between ICD-10, Read and OPCS
decode Show term descriptions for ICD, OPCS or Read codes
dictis Which terms are in a particular dictionary
expandCodelist Contract and expand ICD-10 codelists according to the hierarchy
explode Show terms not included in the selection but sharing the first few characters of the Read, OPCS or ICD10 code
exploreCodes Manage codelists and create a new codelist interactively
export Export the codelists to the definitive .csv format or .dta (Stata) format
export.codelist Export the codelists to the definitive .csv format or .dta (Stata) format
exportall Export the codelists to the definitive .csv format or .dta (Stata) format
getCodelist Find and import a codelist from a folder
getdictionary Get and set which dictionary or dictionaries to use
is.codelist codelist: S3 class for lists of Read, OPCS or ICD-10 codes
is.selection selection: S3 class for a list of Read, OPCS and/or ICD-10 terms
length.selection Prints the codes in a selection
loadDicts Script to replace the source dictionaries used by CALIBERcodelists
medcodeis Select Read codes with particular medcode(s)
merge.codelist Merge two codelists
META Metadata for the master dictionary, stored in a data.table
NOT Logical operators for selection objects
print.codelist codelist: S3 class for lists of Read, OPCS or ICD-10 codes
print.codelistComparison Compare two codelists
print.selection Prints the codes in a selection
process Process an R Markdown file
removeUnusedCategories Get and set categories table for the master dictionary
retrieveCategories Get and set categories table for the master dictionary
saveCategories Get and set categories table for the master dictionary
selection selection: S3 class for a list of Read, OPCS and/or ICD-10 terms
setdictionary Get and set which dictionary or dictionaries to use
setMetadata Set metadata for a codelist or the master dictionary
showhtml Show the selected and excluded terms in HTML
subset.codelist codelist: S3 class for lists of Read, OPCS or ICD-10 codes
termhas Select terms which contain a particular string
|.selection Boolean operators for the S3 selection class