SigFidelity {vegsoup}R Documentation

Experimental Function

Description

Experimental.

Usage

## S4 method for signature 'VegsoupPartition'
SigFidelity(obj, mode = 1, nperm = 999, alternative = "two.sided", verbose = TRUE)

Arguments

obj

'VegsoupPartition' object.

mode

type of analysis. See ‘Details’.

nperm

number of permutations

alternative

alternative hypthersis.

verbose

more output.

Details

mode = 0 looks for species whose abundance is significantly higher in one of the groups. mode = 1 looks for species whose abundance is significantly higher in sites belonging to one group as opposed to sites not belonging to it.

Value

An object of class 'VegsoupPartitionFidelity'

Author(s)

Adapted from function signassoc() of package indicspecies by Miquel De Cáceres Ainsa.


[Package vegsoup version 0.2-7 Index]