plotNeighbourLD {synbreed} | R Documentation |
A function to visualize Linkage Disequilibrium estimates between adjacent markers.
plotNeighbourLD(LD, gpData, dense=FALSE, nMarker = TRUE, centr=NULL, file=NULL, fileFormat="pdf", ...)
LD |
object of class |
gpData |
object of class |
dense |
|
nMarker |
|
centr |
|
file |
Optionally a path to a file where the plot is saved to |
fileFormat |
|
... |
further graphical arguments for function |
The plot is similar to plotGenMap
with the option dense=TRUE
, but here the LD between adjacent markers is plotted along the chromosomes.
Plot of neighbour LD along each chromosome. One chromosome is displayed from the first to the last marker.
Theresa Albrecht and Hans-Juergen Auinger
## Not run: library(synbreedData) data(maize) maize2 <-codeGeno(maize) LD <- pairwiseLD(maize2,chr=1:10,type="matrix") plotNeighbourLD(LD,maize2,nMarker=FALSE) ## End(Not run)