read.otu.tsv {ebimetagenomics} | R Documentation |
This function reads an OTU count data file associated with a particular run from the EMG portal. The OTU data is returned as a data frame.
read.otu.tsv(fileName,...)
fileName |
A string representing a filename (or URL) corresponding to a valid EMG OTU TSV file. |
... |
Extra arguments to be passed to |
An R data frame containing OTU count data. The first column is the OTU ID, the second is the count, and the third contains a taxonomic classification.
getSampleOtu
, mergeOtu
, getRunOtu