Multi-Layer Group-Lasso

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Documentation for package ‘MLGL’ version 0.5.1

Help Pages

MLGL-package MLGL
coef.cv.MLGL Get coefficients from a 'cv.MLGL' object
coef.MLGL Get coefficients from a 'MLGL' object
cv.MLGL Multi-Layer Group-Lasso with cross V-fold validation
Ftest F-test
fullProcess Full process of MLGL
fullProcess.formula Full process of MLGL
hierarchicalFDR Hierachical testing with FDR control
hierarchicalFWER Hierachical testing with FWER control
HMT Hierarchical Multiple Testing procedure Apply Hierarchical Multiple Testing procedure on a 'MLGL' object
listToMatrix Obtain a sparse matrix of the coefficients of the path
MLGL Multi-Layer Group-Lasso
MLGL.formula Multi-Layer Group-Lasso
overlapgglasso Group-lasso with overlapping groups
partialFtest Partial F-test
plot.cv.MLGL Plot the cross-validation obtained from 'cv.MLGL' function
plot.fullProcess Plot the path obtained from 'fullProcess' function
plot.HMT Plot the path obtained from 'HMT' function
plot.MLGL Plot the path obtained from 'MLGL' function
plot.stability.MLGL Plot the stability path obtained from 'stability.MLGL' function
predict.cv.MLGL Predict fitted values from a 'cv.MLGL' object
predict.MLGL Predict fitted values from a 'MLGL' object
print.fullProcess Print Values Print a 'fullProcess' object
print.HMT Print Values Print a 'HMT' object
print.MLGL Print Values Print a 'MLGL' object
selFDR Selection from hierarchical testing with FDR control
selFWER Selection from hierarchical testing with FWER control
simuBlockGaussian Simulate multivariate Gaussian samples with block diagonal varaince matrix
stability.MLGL Stability Selection for Multi-Layer Group-lasso
summary.fullProcess Object Summaries Summary of a 'fullProcess' object
summary.HMT Object Summaries Summary of a 'HMT' object
summary.MLGL Object Summaries Summary of a 'MLGL' object
uniqueGroupHclust Find all unique groups in 'hclust' results