Community Ecology Analyses

Documentation for package ‘CommEcol’ version 1.7.0

CommEcol-package	Community Ecology Analyses
autosimi	Autosimilarity curve of species community data
betaRegDisp	Beta diversity metrics between sites in a moving window along environmental gradients
CommEcol	Community Ecology Analyses
compas	Simulation of species community data along gradients
dis.chao	Chao et al. dissimilarity indices
dis.goodall	Goodall dissimilarity index
dis.nness	NNESS and NESS dissimilarity indices
dis.nness.find.m	NNESS and NESS dissimilarity indices
japi	Macroinvertebrate morphospecies living on stones of a stream in southeast Brazil
part.m.tree	Partition of multi-sample dissimilarity indices using phylogenetic/functional data
part.p.tree	Partition of pair-wise dissimilarity indices using phylogenetic/functional data
select.window	Select cells inside a defined window of a gridded dataset
sites4.6	Artificial dataset containing 4 samples [rows] and 6 species[columns].
sites5.6	Artificial dataset containing 5 samples [rows] and 6 species[columns].
sites6.6	Artificial dataset containing 6 samples [rows] and 6 species[columns].
stairs6	Example of phylogenetic tree containing 6 species.
standExtent	Standardization of spatial extent for two metacommunities by subsampling
tree6	Example of phylogenetic tree containing 6 species.
treeNodf	Tree-like Nestedness of Ecological Metacommunities
treeNodfTest	Tree-like Nestedness of Ecological Metacommunities