DiffeRential Evolution Adaptive Metropolis


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Documentation for package ‘dream’ version 0.4-2

Help Pages

calc.loglik Likelihood functions
calc.rmse Likelihood functions
calc.weighted.rmse Likelihood functions
coef.dream Extract parameter values from dream or dream_model object
coef.dream_model Extract parameter values from dream or dream_model object
compareToMatlab Compare dream and matlab results
CovInit Alternative sampling method...
dream DiffeRential Evolution Adaptive Metropolis (DREAM)
dreamCalibrate Utility to calibrate a function using dream
getMatlabControl Get dream control settings from matlab .mat file
getMatlabSeq Get dream chains from matlab .mat file
LHSInit Latin Hypercube sampling...
maxLikCoda Extract parameter values from dream or dream_model object
plot.dream Visualising DREAM results
plotMCMCQQ QQ plot of MCMC chains
predict.dream_model Predict values using dream_model object
simulate.dream Simulate values from a distribution using converged MCMC chains from a DREAM object
snow.chains DREAM with external batch files in parallel folders
snowchains DREAM with external batch files in parallel folders
window.dream Extract MCMC chains from a DREAM object
writeMatlabDREAMSettings Write settings for dream in matlab