Ranking of biclusters using another data source


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Documentation for package ‘biclustRank’ version 1.0

Help Pages

biclustRank-package Ranking of Biclusters
biclustRank Ranking of Biclusters
boxplotBC Boxplot of similarity scores by bicluster.
choosefp Select top features that differentiates the samples in the bicluster from the other samples.
cumBC Plot of cdf of similarity scores by bicluster.
Distance Compute for the distance matrix of another data source.
expressionMatrix Gene expression matrix example.
extractBicList Extracting biclusters from the results of running fabia, isa, plaid.
extractSimBC Get the compound similarity matrix by bicluster.
fingerprints Chemical structure data matrix example.
getLowerSim Obtain the lower triangle similarity scores.
heatmapBC Heatmap of similarity scores by BC.
heatmapBC2 Heatmap of the chemical structure data using the top features by BC.
plotFabia Plot of the gene loadings and/or sample scores by FABIA bicluster.
ppBC Plot of gene profiles per bicluster.
statTab Get the compound similarity matrix by bicluster.