GWAS Quality Control

Documentation for package ‘GWAtoolbox’ version 2.2.4-10

annotate	SNPs annotation with regions (e.g. genes).
dispersion_check	Effect estimates precision by sample size.
gwasformat	Formatting of GWAS data files.
gwasqc	Quality Control Of GWA Data
harmonize	The harmonization of SNP identifiers and alleles.
harmonize_by_pos	The harmonization of SNP identifiers and alleles.
independent_snps	Selection of independent SNPs.
kusk_check	Comparison Of Skewness and Kurtosis of Effect between GWAS studies.
pannotate	SNPs annotation with regions (e.g. genes).
pgwasformat	Formatting of GWAS result files.
pgwasqc	Quality Control Of GWA Data
re	Random Effects Heterogeneity Analysis.