Infrastructure for seriation


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Documentation for package ‘seriation’ version 1.1-0

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"[.ser_permutation" Class ser\_permutation - A Collection of Permutation Vectors for Seriation
bertinplot Plot a Bertin Matrix
bertin_cut_line Plot a Bertin Matrix
bluered Different Useful Color Palettes
c.ser_permutation Class ser\_permutation - A Collection of Permutation Vectors for Seriation
Chameleon 2D Data Sets used for the CHAMELEON Clustering Algorithm
chameleon 2D Data Sets used for the CHAMELEON Clustering Algorithm
chameleon_ds4 2D Data Sets used for the CHAMELEON Clustering Algorithm
chameleon_ds5 2D Data Sets used for the CHAMELEON Clustering Algorithm
chameleon_ds7 2D Data Sets used for the CHAMELEON Clustering Algorithm
chameleon_ds8 2D Data Sets used for the CHAMELEON Clustering Algorithm
create_lines_data Create Simulated Data for Seriation Evaluation
create_ordered_data Create Simulated Data for Seriation Evaluation
criterion Criterion for a Loss/Merit Function for Data Given a Permutation
criterion.array Criterion for a Loss/Merit Function for Data Given a Permutation
criterion.dist Criterion for a Loss/Merit Function for Data Given a Permutation
criterion.matrix Criterion for a Loss/Merit Function for Data Given a Permutation
dissplot Dissimilarity Plot
dist Dissimilarity Between Seriation Orders
get_criterion_method Registry for Criterion Methods
get_method Class ser\_permutation\_vector - A Single Permutation Vector for Seriation
get_order Getting an Integer Permutation Vector from a Permutation Object
get_order.hclust Getting an Integer Permutation Vector from a Permutation Object
get_order.integer Getting an Integer Permutation Vector from a Permutation Object
get_order.ser_permutation Getting an Integer Permutation Vector from a Permutation Object
get_order.ser_permutation_vector Getting an Integer Permutation Vector from a Permutation Object
get_rank Getting an Integer Permutation Vector from a Permutation Object
get_seriation_method Registry for Seriation Methods
grays Different Useful Color Palettes
greenred Different Useful Color Palettes
greys Different Useful Color Palettes
hmap Plot Heat Map Reordered by Different Algorithms
Irish Irish Referendum Data Set
iVAT Visual Analysis for Cluster Tendency Assessment (VAT/iVAT)
length.ser_permutation_vector Class ser\_permutation\_vector - A Single Permutation Vector for Seriation
list_criterion_methods Registry for Criterion Methods
list_seriation_methods Registry for Seriation Methods
Munsingen Hodson's Munsingen Data Set
panel.bars Plot a Bertin Matrix
panel.blocks Plot a Bertin Matrix
panel.circles Plot a Bertin Matrix
panel.lines Plot a Bertin Matrix
panel.squares Plot a Bertin Matrix
path_dist Visual Analysis for Cluster Tendency Assessment (VAT/iVAT)
permutation Class ser\_permutation - A Collection of Permutation Vectors for Seriation
permutation_matrix2vector Conversion Between Permutation Vector and Permutation Matrix
permutation_vector Class ser\_permutation\_vector - A Single Permutation Vector for Seriation
permutation_vector2matrix Conversion Between Permutation Vector and Permutation Matrix
permute Permute a dist Object, a Matrix, an Array, a List, or a Vector
permute.array Permute a dist Object, a Matrix, an Array, a List, or a Vector
permute.data.frame Permute a dist Object, a Matrix, an Array, a List, or a Vector
permute.dist Permute a dist Object, a Matrix, an Array, a List, or a Vector
permute.list Permute a dist Object, a Matrix, an Array, a List, or a Vector
permute.matrix Permute a dist Object, a Matrix, an Array, a List, or a Vector
permute.numeric Permute a dist Object, a Matrix, an Array, a List, or a Vector
pimage Permutation Image Plot
pimage.dist Permutation Image Plot
pimage.matrix Permutation Image Plot
plot.reordered_cluster_dissimilarity_matrix Dissimilarity Plot
print.reordered_cluster_dissimilarity_matrix Dissimilarity Plot
print.ser_permutation Class ser\_permutation - A Collection of Permutation Vectors for Seriation
print.ser_permutation_vector Class ser\_permutation\_vector - A Single Permutation Vector for Seriation
Psych24 Results of 24 Psychological Test for 8th Grade Students
registry_criterion Registry for Criterion Methods
registry_seriate Registry for Seriation Methods
reorder Reorder Dendrograms using Optimal Leaf Ordering
reorder.hclust Reorder Dendrograms using Optimal Leaf Ordering
rev.ser_permutation_vector Class ser\_permutation\_vector - A Single Permutation Vector for Seriation
seriate Seriate Dissimilarity Matrices, Matrices or Arrays
seriate.array Seriate Dissimilarity Matrices, Matrices or Arrays
seriate.dist Seriate Dissimilarity Matrices, Matrices or Arrays
seriate.matrix Seriate Dissimilarity Matrices, Matrices or Arrays
seriation_align Dissimilarity Between Seriation Orders
seriation_cor Dissimilarity Between Seriation Orders
seriation_dist Dissimilarity Between Seriation Orders
ser_permutation Class ser\_permutation - A Collection of Permutation Vectors for Seriation
ser_permutation_vector Class ser\_permutation\_vector - A Single Permutation Vector for Seriation
set_criterion_method Registry for Criterion Methods
set_seriation_method Registry for Seriation Methods
show_criterion_methods Registry for Criterion Methods
show_seriation_methods Registry for Seriation Methods
Townships Bertin's Characteristics of Townships
VAT Visual Analysis for Cluster Tendency Assessment (VAT/iVAT)
Wood Gene Expression Data for Wood Formation in Poplar Trees
Zoo Zoo Data Set