Simulation of ecological lake models


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Documentation for package ‘rSALMO’ version 0.3-0

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rSALMO-package Ecological Simulation of Lakes
aggregate_daily Calculate Daily Sums or Averages
approxTime Linear Interpolation with Complete Matrices or Data Frames
approxTime1 Linear Interpolation with Complete Matrices or Data Frames
approxTimeEq Linear Interpolation with Complete Matrices or Data Frames
approxTimeEq1 Linear Interpolation with Complete Matrices or Data Frames
areaFunction Hypsographic Functions for Conical Lake Geometry
arrangeLayerWise Convert Layer Structure to Vector
arrangeStateWise Convert Layer Structure to Vector
calczmix Calculate Mixing Depth
call_salmodll Call SALMO Shared Library
check_salmo_parms Check SALMO Model Parameters
data_bautzen_1997 Input data set data_bautzen_1997
extract_phys Extract Physical Structure from Input Data
findIndexEq Linear Interpolation with Complete Matrices or Data Frames
get_salmo_parms Get SALMO Parameters
hypso_bautzen Data set hypso_bautzen
hypso_cone Hypsographic Table of a Conic Lake
hypso_functions Hypsographic Functions from Tabular Interpolation
init_salmo_integers Initialize Index Values of Parameter List
irad Irradiation Data Set
layers2vector Convert Layer Structure to Vector
layers_long2wide Reformat Layer Strcuture from Long Format to Wide Format
makeInputVector Make Input Vector from List of Input Data
o2sat Oxygen Saturation in Fresh Water
parms_mac_ctrl parms_mac_ctrl data set
parms_mac_other parms_mac_other data set
parms_mac_plants parms_mac_plants data set
parms_salmo_ctrl parms_salmo_ctrl data set
parms_salmo_other parms_salmo_other data set
parms_salmo_phyto parms_salmo_phyto data set
plot_inputs Plot Inputs of a 1D Model
rSALMO Ecological Simulation of Lakes
salmo_1box Derivatives of SALMO
salmo_1d Derivatives of SALMO
salmo_2box Derivatives of SALMO
salmo_input_names Column Names of SALMO State and Input Variables
salmo_mac_1box Derivatives of SALMO with macrophytes
salmo_mac_1d Derivatives of SALMO with macrophytes
salmo_state_names Column Names of SALMO State and Input Variables
sedimentation_matrix Create Sedimentation and Migration Matrix for SALMO-1D
setparms Set Model Parameters
transport Calulate Vertical Transport for a 1D Lake Model
turbulence Turbulence Data Set
vol2level Hypsographic Functions for Conical Lake Geometry
volumeFunction Hypsographic Functions for Conical Lake Geometry