Bayesian delta-GLM package for constructing indices of CPUE data

Documentation for package ‘nwfscDeltaGLM’ version 1.0

nwfscDeltaGLM-package	Package for conducting Bayesian estimation of CPUE index standardization (fisheries, ecology, etc). ~~ package title ~~
cMx	Converts and object to a matrix
ComputeIndices	Computes indices from fitted delta-GLMM model
ComputeMleIndices	Computes maximum likelihood indices from fitted delta-GLMM model
ConvergencePlot	Makes plots related to MCMC convergence diagnostics
corFunction	Function to calculate the correlations from the precision matrix
doMCMCDiags	doMCMCDiags is the master diagnostic function
fitDeltaGLM	Fitting Delta-Generalized Linear Mixed Models
loadFn	loadFn
logDensity	logDensity
MapData	MapData is function that makes a map by latitude / depth
McmcDiagnosticsPlot	McmcDiagnosticsPlot does Gelman-Rubin and optionally Geweke diagnostic plots
nwfscDeltaGLM	Package for conducting Bayesian estimation of CPUE index standardization (fisheries, ecology, etc). ~~ package title ~~
PlotData	PlotData is the function that makes plots of raw data before without fitting statistical models
PlotOffset	PlotOffset plots the positive and presence absence offset
PosteriorPredictive	PosteriorPredictive is the function that converts the raw trawl data file into a format that is used by the JAGS model
processData	processData is the function that converts the raw trawl data file into a format that is used by the JAGS model
readIn	readIn...
SimSimple	SimSimple...
strata.fn	strata.fn...