Joint segmentation of multivariate (copy number) signals


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Documentation for package ‘jointseg’ version 0.6.4

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jointseg-package Joint segmentation of multivariate (copy number) signals
binMissingValues binMissingValues
doCBS Run CBS segmentation
doDynamicProgramming Run segmentation by dynamic programming
doGFLars Group fused Lars segmentation
doPSCBS Run Paired PSCBS segmentation
doPSCN Run PSCN segmentation (defunct)
doRBS Run RBS segmentation
estimateSd Robust standard deviation estimator
getCopyNumberDataByResampling Generate a copy number profile by resampling input data
getTpFp Calculate the number of true positives and false positives
jointSeg Joint segmentation of multivariate signals
jointseg Joint segmentation of multivariate (copy number) signals
mapPositionsBack mapPositionsBack
modelSelection Model selection
plotSeg Plot signal and breakpoints with segment-level signal estimates
pruneByDP Exact segmentation of a multivariate signal using dynamic programming.
PSSeg Parent-Specific copy number segmentation
randomProfile Generate a random multi-dimensional profile with breakpoints and noise
segmentByGFLars Group fused Lars segmentation (low-level)
segmentByRBS Recursive Binary Segmentation (low-level)