Storing, manipulating and analysis spectroscopy and associated data in R.

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Documentation for package ‘inspectr’ version 0.3-15

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A B C D F I K L M N P R S W misc

-- A --

aggregate_spectra Aggregates spectral and data information
aggregate_spectra-method Aggregates spectral and data information
apply_spectra Apply a function on the spectra of a Spectra* object
as.data.frame.SpatialSpectra Spectra* classes
as.data.frame.Spectra Spectra* classes
as.data.frame.SpectraDataFrame Spectra* classes
australia Australia spectra library data set

-- B --

base_line Baseline correction using the baseline package
base_line-method Baseline correction using the baseline package
big.head Return the First or Last Part of an Object
big.tail Return the First or Last Part of an Object

-- C --

continuum_removal Continuum removal
coordinates<- Sets spatial coordinates to create 'SpatialSpectraDataFrame' objects
coordinates<--method Sets spatial coordinates to create 'SpatialSpectraDataFrame' objects
cut Manipulating the wavelength range of a 'Spectra' object
cut-method Manipulating the wavelength range of a 'Spectra' object

-- D --

dim Retrieve dimensions of Spectra* objects
dim.Spectra Retrieve dimensions of Spectra* objects

-- F --

features Retrieves or sets the data slot of a SpectraDataFrame object.
features-method Retrieves or sets the data slot of a SpectraDataFrame object.
features-methods Retrieves or sets the data slot of a SpectraDataFrame object.
features<- Retrieves or sets the data slot of a SpectraDataFrame object.
features<--method Retrieves or sets the data slot of a SpectraDataFrame object.
fill_spectra Fill missing wavelengths of a Spectra* object with a given value

-- I --

ids Retrieves or sets the ids of a 'Spectra*' object.
ids-method Retrieves or sets the ids of a 'Spectra*' object.
ids<- Retrieves or sets the ids of a 'Spectra*' object.
ids<--method Retrieves or sets the ids of a 'Spectra*' object.
inspectr Spectra* classes

-- K --

kenstone Kennard-Stone algorithm for optimal calibration set selection.
kenstone-method Kennard-Stone algorithm for optimal calibration set selection.

-- L --

length Retrieve dimensions of Spectra* objects
length.Spectra Retrieve dimensions of Spectra* objects

-- M --

melt_spectra melt_spectra
melt_spectra-method melt_spectra
melt_spectra-methods melt_spectra
mutate Mutate a Spectra* object by transforming the spectra values, and/or adding new or replacing existing attributes.
mutate-method Mutate a Spectra* object by transforming the spectra values, and/or adding new or replacing existing attributes.
mutate.Spectra Mutate a Spectra* object by transforming the spectra values, and/or adding new or replacing existing attributes.

-- N --

names.SpectraDataFrame Spectra* classes
names<-.SpectraDataFrame Spectra* classes
ncol-method Retrieve dimensions of Spectra* objects
nrow-method Retrieve dimensions of Spectra* objects

-- P --

plot-method Plots an object inheriting from the Spectra class
plot.Spectra Plots an object inheriting from the Spectra class
plot_offset Plots an object inheriting from the Spectra class
plot_offset-method Plots an object inheriting from the Spectra class
plot_stack Plots an object inheriting from the Spectra class
plot_stack-method Plots an object inheriting from the Spectra class
plot_summary Plots an object inheriting from the Spectra class
plot_summary-method Plots an object inheriting from the Spectra class
print-method Spectra* classes
print.summary.Spectra Summary

-- R --

rbind.Spectra Stacking 'Spectra' objects together
rbind.SpectraDataFrame Stacking 'Spectra' objects together
res Wavelengths of Spectra* objects
res-method Wavelengths of Spectra* objects
res.integer Wavelengths of Spectra* objects
res.numeric Wavelengths of Spectra* objects
res.Spectra Wavelengths of Spectra* objects
rnv Standard and Robust Normal Variate transformations

-- S --

separate Separates a 'Spectra*' object into a calibration and a validation set.
separate-method Separates a 'Spectra*' object into a calibration and a validation set.
separate.Spectra Separates a 'Spectra*' object into a calibration and a validation set.
show-method Spectra* classes
snv Standard and Robust Normal Variate transformations
SpatialSpectra-class Spectra* classes
SpatialSpectraDataFrame Constructor for the SpatialSpectraDataFrame class.
SpatialSpectraDataFrame-class Spectra* classes
Spectra Constructor for the Spectra class.
spectra Retrieves or sets the spectra of a 'Spectra*' objects.
Spectra-class Spectra* classes
spectra-method Retrieves or sets the spectra of a 'Spectra*' objects.
spectra<- Retrieves or sets the spectra of a 'Spectra*' objects.
spectra<--method Retrieves or sets the spectra of a 'Spectra*' objects.
SpectraDataFrame Constructor for the SpectraDataFrame class.
SpectraDataFrame-class Spectra* classes
splice-method "Splicing" and interpolation of spectra
split Split a Spectra* object using factors
split-method Split a Spectra* object using factors
split.Spectra Split a Spectra* object using factors
subset Subset SpectraDataFrame object
subset-method Subset SpectraDataFrame object
subset.SpectraDataFrame Subset SpectraDataFrame object
summary.Spectra Summary

-- W --

wl Retrieves or sets the wavelengths of a 'Spectra*' object.
wl-method Retrieves or sets the wavelengths of a 'Spectra*' object.
wl<- Retrieves or sets the wavelengths of a 'Spectra*' object.
wl<--method Retrieves or sets the wavelengths of a 'Spectra*' object.
wl_units Wavelengths of Spectra* objects
wl_units-method Wavelengths of Spectra* objects
wl_units<- Wavelengths of Spectra* objects
wl_units<--method Wavelengths of Spectra* objects

-- misc --

"Splicing" and interpolation "Splicing" and interpolation of spectra
$ Extracting and replacing parts of Spectra* objects
$-method Extracting and replacing parts of Spectra* objects
$<- Extracting and replacing parts of Spectra* objects
$<--method Extracting and replacing parts of Spectra* objects
[ Extracting and replacing parts of Spectra* objects
[-method Extracting and replacing parts of Spectra* objects
[<- Extracting and replacing parts of Spectra* objects
[<--method Extracting and replacing parts of Spectra* objects
[[ Extracting and replacing parts of Spectra* objects
[[-method Extracting and replacing parts of Spectra* objects
[[<- Extracting and replacing parts of Spectra* objects
[[<--method Extracting and replacing parts of Spectra* objects