A B C D E F G H I J L N O P Q R S T W
SuperCurve-package | Reverse phase protein lysate array analysis |
actb | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
actb.gray | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
akt | AKT, ERK2, and CTNNB1 expression in cell lines |
bar | FOO, BAR, PLUGH, and WALDO expression |
BoundedRange | Class "BoundedRange" |
BoundedRange-class | Class "BoundedRange" |
c.erk2 | AKT, ERK2, and CTNNB1 expression in cell lines |
cas3 | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
CobsFitClass-class | Class "CobsFitClass" |
coef-method | Class "RPPAFit" |
coef-method | Class "FitClass" |
coef-method | Class "LogisticFitClass" |
coefficients-method | Class "RPPAFit" |
coefficients-method | Class "FitClass" |
coefficients-method | Class "LogisticFitClass" |
coerce-method | Class "Directory" |
ctnnb1 | AKT, ERK2, and CTNNB1 expression in cell lines |
DefaultProgressMonitor | Class "DefaultProgressMonitor" |
DefaultProgressMonitor-class | Class "DefaultProgressMonitor" |
design40 | AKT, ERK2, and CTNNB1 expression in cell lines |
dim-method | Class "RPPA" |
dim-method | Class "RPPADesign" and Class "RPPADesignParams" |
Directory | Class "Directory" |
Directory-class | Class "Directory" |
DS5RPPAPreFitQC-class | Class "DS5RPPAPreFitQC" |
elapsed | Method "elapsed" |
elapsed-method | Class "DefaultProgressMonitor" |
elapsed-method | Class "ElapsedTime" |
elapsed-method | Method "elapsed" |
ElapsedTime | Class "ElapsedTime" |
ElapsedTime-class | Class "ElapsedTime" |
erk2 | ERK2, GSK3, and JNK expression in tumor samples |
fak | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
FitClass-class | Class "FitClass" |
fitCurveAndSummarizeFromSettings | Class "SuperCurveSettings" |
fitSeries-method | Class "FitClass" |
fitSeries-method | Class "LogisticFitClass" |
fitSeries-method | Class "CobsFitClass" |
fitSeries-method | Class "LoessFitClass" |
fitSlide-method | Class "FitClass" |
fitSlide-method | Class "LogisticFitClass" |
fitSlide-method | Class "CobsFitClass" |
fitSlide-method | Class "LoessFitClass" |
fitted-method | Class "RPPAFit" |
fitted-method | Class "FitClass" |
fitted-method | Class "LogisticFitClass" |
fitted-method | Class "CobsFitClass" |
fitted-method | Class "LoessFitClass" |
foo | FOO, BAR, PLUGH, and WALDO expression |
getConfidenceInterval | Compute Confidence Intervals for a Model Fit to Dilution Series |
getRegisteredModel | Model Registration Methods |
getRegisteredModelKeys | Model Registration Methods |
getRegisteredModelLabel | Model Registration Methods |
getRegisteredNormalizationMethod | Normalization Method Registration Methods |
getRegisteredNormalizationMethodKeys | Normalization Method Registration Methods |
getRegisteredNormalizationMethodLabel | Normalization Method Registration Methods |
getStages | Class "SCProgressMonitor" |
getSteps | Class "RPPADesign" and Class "RPPADesignParams" |
gsk3 | ERK2, GSK3, and JNK expression in tumor samples |
hist-method | Class "RPPAFit" |
image-method | Class "RPPA" |
image-method | Class "RPPADesign" and Class "RPPADesignParams" |
image-method | Class "RPPAFit" |
is.BoundedRange | Class "BoundedRange" |
is.DefaultProgressMonitor | Class "DefaultProgressMonitor" |
is.Directory | Class "Directory" |
is.ElapsedTime | Class "ElapsedTime" |
is.FitClass | Class "FitClass" |
is.ProgressMonitor | Class "ProgressMonitor" |
is.RPPA | Class "RPPA" |
is.RPPADesign | Class "RPPADesign" and Class "RPPADesignParams" |
is.RPPADesignParams | Class "RPPADesign" and Class "RPPADesignParams" |
is.RPPAFit | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
is.RPPAFitParams | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
is.RPPANormalizationParams | Class "RPPANormalizationParams" |
is.RPPAPreFitQC | Class "RPPAPreFitQC" |
is.RPPASet | Class "RPPASet" |
is.RPPASetSummary | Class "RPPASetSummary" |
is.RPPASpatialParams | Class "RPPASpatialParams" |
is.SCProgressMonitor | Class "SCProgressMonitor" |
is.SuperCurveSettings | Class "SuperCurveSettings" |
jnk | ERK2, GSK3, and JNK expression in tumor samples |
LoessFitClass-class | Class "LoessFitClass" |
LogisticFitClass-class | Class "LogisticFitClass" |
names-method | Class "RPPADesign" and Class "RPPADesignParams" |
normalize | Method "normalize" |
normalize-method | Class "RPPASet" |
normalize-method | Normalization |
normalize-method | Method "normalize" |
odc1 | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
paramString-method | Class "RPPADesign" and Class "RPPADesignParams" |
paramString-method | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
paramString-method | Class "RPPANormalizationParams" |
paramString-method | Class "RPPASpatialParams" |
paramString-method | Class "SuperCurveSettings" |
plot-method | Class "RPPADesign" and Class "RPPADesignParams" |
plot-method | Class "RPPAFit" |
plugh | FOO, BAR, PLUGH, and WALDO expression |
progressDone | Methods for Manipulating Progess Monitors |
progressDone-method | Class "DefaultProgressMonitor" |
progressDone-method | Class "ProgressMonitor" |
progressDone-method | Methods for Manipulating Progess Monitors |
progressDone<- | Methods for Manipulating Progess Monitors |
progressDone<--method | Class "DefaultProgressMonitor" |
progressDone<--method | Class "ProgressMonitor" |
progressDone<--method | Methods for Manipulating Progess Monitors |
progressError | Methods for Manipulating Progess Monitors |
progressError-method | Class "DefaultProgressMonitor" |
progressError-method | Class "ProgressMonitor" |
progressError-method | Methods for Manipulating Progess Monitors |
progressError<- | Methods for Manipulating Progess Monitors |
progressError<--method | Class "DefaultProgressMonitor" |
progressError<--method | Class "ProgressMonitor" |
progressError<--method | Methods for Manipulating Progess Monitors |
progressLabel | Methods for Manipulating Progess Monitors |
progressLabel-method | Class "DefaultProgressMonitor" |
progressLabel-method | Class "ProgressMonitor" |
progressLabel-method | Methods for Manipulating Progess Monitors |
progressLabel<- | Methods for Manipulating Progess Monitors |
progressLabel<--method | Class "DefaultProgressMonitor" |
progressLabel<--method | Class "ProgressMonitor" |
progressLabel<--method | Methods for Manipulating Progess Monitors |
progressMarquee | Methods for Manipulating SuperCurve Progess Models |
progressMarquee-method | Class "SCProgressMonitor" |
progressMarquee-method | Methods for Manipulating SuperCurve Progess Models |
progressMarquee<- | Methods for Manipulating SuperCurve Progess Models |
progressMarquee<--method | Class "SCProgressMonitor" |
progressMarquee<--method | Methods for Manipulating SuperCurve Progess Models |
progressMaximum | Methods for Manipulating Progess Monitors |
progressMaximum-method | Class "BoundedRange" |
progressMaximum-method | Class "DefaultProgressMonitor" |
progressMaximum-method | Class "ProgressMonitor" |
progressMaximum-method | Methods for Manipulating Progess Monitors |
progressMaximum<- | Methods for Manipulating Progess Monitors |
progressMaximum<--method | Class "BoundedRange" |
progressMaximum<--method | Class "DefaultProgressMonitor" |
progressMaximum<--method | Class "ProgressMonitor" |
progressMaximum<--method | Methods for Manipulating Progess Monitors |
progressMinimum | Methods for Manipulating Progess Monitors |
progressMinimum-method | Class "BoundedRange" |
progressMinimum-method | Class "DefaultProgressMonitor" |
progressMinimum-method | Class "ProgressMonitor" |
progressMinimum-method | Methods for Manipulating Progess Monitors |
progressMinimum<- | Methods for Manipulating Progess Monitors |
progressMinimum<--method | Class "BoundedRange" |
progressMinimum<--method | Class "DefaultProgressMonitor" |
progressMinimum<--method | Class "ProgressMonitor" |
progressMinimum<--method | Methods for Manipulating Progess Monitors |
ProgressMonitor-class | Class "ProgressMonitor" |
progressStage | Methods for Manipulating SuperCurve Progess Models |
progressStage-method | Class "SCProgressMonitor" |
progressStage-method | Methods for Manipulating SuperCurve Progess Models |
progressStage<- | Methods for Manipulating SuperCurve Progess Models |
progressStage<--method | Class "SCProgressMonitor" |
progressStage<--method | Methods for Manipulating SuperCurve Progess Models |
progressValue | Methods for Manipulating Progess Monitors |
progressValue-method | Class "BoundedRange" |
progressValue-method | Class "DefaultProgressMonitor" |
progressValue-method | Class "ProgressMonitor" |
progressValue-method | Methods for Manipulating Progess Monitors |
progressValue<- | Methods for Manipulating Progess Monitors |
progressValue<--method | Class "BoundedRange" |
progressValue<--method | Class "DefaultProgressMonitor" |
progressValue<--method | Class "ProgressMonitor" |
progressValue<--method | Methods for Manipulating Progess Monitors |
qcprob | Method "qcprob" |
qcprob-method | Class "RPPAPreFitQC" |
qcprob-method | Class "DS5RPPAPreFitQC" |
qcprob-method | Method "qcprob" |
registerModel | Model Registration Methods |
registerNormalizationMethod | Normalization Method Registration Methods |
resid-method | Class "RPPAFit" |
residuals-method | Class "RPPAFit" |
RPPA | Class "RPPA" |
RPPA-class | Class "RPPA" |
rppaCell | AKT, ERK2, and CTNNB1 expression in cell lines |
rppaCell-data | AKT, ERK2, and CTNNB1 expression in cell lines |
RPPADesign | Class "RPPADesign" and Class "RPPADesignParams" |
RPPADesign-class | Class "RPPADesign" and Class "RPPADesignParams" |
RPPADesignFromParams | Class "RPPADesign" and Class "RPPADesignParams" |
RPPADesignParams | Class "RPPADesign" and Class "RPPADesignParams" |
RPPADesignParams-class | Class "RPPADesign" and Class "RPPADesignParams" |
RPPAFit | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
RPPAFit-class | Class "RPPAFit" |
RPPAFitFromParams | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
RPPAFitParams | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
RPPAFitParams-class | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
RPPANormalizationParams | Class "RPPANormalizationParams" |
RPPANormalizationParams-class | Class "RPPANormalizationParams" |
RPPAPreFitQC | Class "RPPAPreFitQC" |
RPPAPreFitQC-class | Class "RPPAPreFitQC" |
RPPASet | Class "RPPASet" |
RPPASet-class | Class "RPPASet" |
RPPASetSummary | Class "RPPASetSummary" |
RPPASetSummary-class | Class "RPPASetSummary" |
rppaSingleSubgrid | FOO, BAR, PLUGH, and WALDO expression |
rppaSingleSubgrid-data | FOO, BAR, PLUGH, and WALDO expression |
RPPASpatialParams | Class "RPPASpatialParams" |
RPPASpatialParams-class | Class "RPPASpatialParams" |
rppaTriple | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
rppaTriple-data | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
rppaTumor | ERK2, GSK3, and JNK expression in tumor samples |
rppaTumor-data | ERK2, GSK3, and JNK expression in tumor samples |
SCProgressMonitor | Class "SCProgressMonitor" |
SCProgressMonitor-class | Class "SCProgressMonitor" |
sdesign | FOO, BAR, PLUGH, and WALDO expression |
seriesNames | Class "RPPADesign" and Class "RPPADesignParams" |
spatialAdjustment | Spatial Correction |
spatialAdjustmentFromParams | Spatial Correction |
spatialCorrection | Spatial Correction |
summary-method | Class "RPPA" |
summary-method | Class "RPPADesign" and Class "RPPADesignParams" |
summary-method | Class "RPPAFit" |
summary-method | Class "RPPASet" |
summary-method | Class "RPPAPreFitQC" |
summary-method | Class "DS5RPPAPreFitQC" |
SuperCurveSettings | Class "SuperCurveSettings" |
SuperCurveSettings-class | Class "SuperCurveSettings" |
tDesign | ERK2, GSK3, and JNK expression in tumor samples |
trimConc-method | Class "FitClass" |
trimConc-method | Class "LogisticFitClass" |
trimConc-method | Class "CobsFitClass" |
trimConc-method | Class "LoessFitClass" |
tripledesign | ACTB, CAS3, FAK, and ODC1 expression in 14 fed/starved cell lines |
waldo | FOO, BAR, PLUGH, and WALDO expression |
write.summary | Method "write.summary" |
write.summary-method | Class "RPPASet" |
write.summary-method | Class "RPPASetSummary" |
write.summary-method | Class "SuperCurveSettings" |
write.summary-method | Method "write.summary" |