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| HMSC-package | Hierarchical modelling of species community |
| as.HMSCdata | Convert data, parameters, and priors to "HMSC" classes |
| as.HMSCparam | Convert data, parameters, and priors to "HMSC" classes |
| as.HMSCprior | Convert data, parameters, and priors to "HMSC" classes |
| basicStatHMSC | Summary statistics of the model probabilities on an object of class hmsc |
| communitySimulH | Simulate a species community |
| communitySimulH.default | Simulate a species community |
| communitySimulH.formula | Simulate a species community |
| communitySimulHT | Simulate a species community |
| communitySimulHT.default | Simulate a species community |
| erf | Error functions |
| erfc | Error functions |
| g | Error functions |
| HMSC | Hierarchical modelling of species community |
| hmscH | Hierarchical modelling of species community |
| hmscH.formula | Hierarchical modelling of species community |
| hmscH.HMSCdata | Hierarchical modelling of species community |
| hmscHT | Hierarchical modelling of species community |
| hmscHT.HMSCdata | Hierarchical modelling of species community |
| ilog | Inverse link functions |
| ilogit | Inverse link functions |
| inverf | Error functions |
| inverfc | Error functions |
| loglikelihood | Log-likelihood of a regression model |
| loglikelihood.default | Log-likelihood of a regression model |
| loglikelihood.formula | Log-likelihood of a regression model |
| loglikelihood.matrix | Log-likelihood of a regression model |
| mixing | Mixing plot |
| plot.communitySimul | Simulate a species community |
| quantile.hmsc | Summary statistics of the model probabilities on an object of class hmsc |
| scamH | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| scamH.formula | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| scamH.HMSCdata | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| scamHT | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| scamHT.HMSCdata | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| scamRandom | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| scamRandom.HMSCdata | Single Component Adaptative Metropolis (SCAM) algorithm with eigenvector rotation |
| summary.hmsc | Summary statistics of the model probabilities on an object of class hmsc |