# Classes and Methods for "Class Comparison" Problems on Microarrays

## Documentation for package ‘ClassComparison’ version 3.3.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

anova-method | Class "MultiLinearModel"
as.data.frame-method | Class "MultiTtest"
as.data.frame-method | Class "MultiLinearModel"
as.data.frame-method | Class "TwoGroupStats"
as.data.frame-method | Class "SingleGroup"
as.data.frame-method | Class "SmoothTtest"
Bum | Class "Bum"
Bum-class | Class "Bum"
BumSummary | Class "BumSummary"
BumSummary-class | Class "BumSummary"
countSignificant | Generic Methods for Significance
countSignificant-method | Class "Bum"
countSignificant-method | Generic Methods for Significance
countSignificant-method | Class "MultiWilcoxonTest"
countSignificant-method | Class "Dudoit"
countSignificant-method | Classes "TNoM" and "fullTNoM"
countSignificant-method | Class "Sam"
cutoffSignificant | Generic Methods for Significance
cutoffSignificant-method | Class "Bum"
cutoffSignificant-method | Generic Methods for Significance
cutoffSignificant-method | Class "MultiWilcoxonTest"
cutoffSignificant-method | Class "Dudoit"
Dudoit | Class "Dudoit"
Dudoit-class | Class "Dudoit"
dwil | Wilcoxon Density Function
fullTNoM-class | Classes "TNoM" and "fullTNoM"
hist-method | Class "Bum"
hist-method | Class "MultiTtest"
hist-method | Class "MultiWilcoxonTest"
hist-method | Class "MultiLinearModel"
hist-method | Classes "TNoM" and "fullTNoM"
image-method | Class "Bum"
likelihoodBum | Class "Bum"
MultiLinearModel | Class "MultiLinearModel"
MultiLinearModel-class | Class "MultiLinearModel"
MultiTtest | Class "MultiTtest"
MultiTtest-class | Class "MultiTtest"
MultiTtestPaired | Classes for Variant T-tests
MultiTtestPaired-class | Classes for Variant T-tests
MultiTtestUnequal | Classes for Variant T-tests
MultiTtestUnequal-class | Classes for Variant T-tests
multiTukey | Class "MultiLinearModel"
MultiWilcoxonTest | Class "MultiWilcoxonTest"
MultiWilcoxonTest-class | Class "MultiWilcoxonTest"
plot-method | Class "MultiTtest"
plot-method | Class "MultiWilcoxonTest"
plot-method | Class "MultiLinearModel"
plot-method | Class "Dudoit"
plot-method | Classes "TNoM" and "fullTNoM"
plot-method | Class "Sam"
plot-method | Class "TwoGroupStats"
plot-method | Class "SingleGroup"
plot-method | Class "SmoothTtest"
print-method | Class "TwoGroupStats"
print-method | Class "SingleGroup"
probDiff | Generic Methods for Significance
probDiff-method | Generic Methods for Significance
probDiff-method | Class "MultiWilcoxonTest"
rankSum | Wilcoxon Rank-Sum Statistic
Sam | Class "Sam"
Sam-class | Class "Sam"
SamSummary | Class "SamSummary"
SamSummary-class | Class "SamSummary"
selectSignificant | Generic Methods for Significance
selectSignificant-method | Class "Bum"
selectSignificant-method | Generic Methods for Significance
selectSignificant-method | Class "MultiWilcoxonTest"
selectSignificant-method | Class "Dudoit"
selectSignificant-method | Classes "TNoM" and "fullTNoM"
selectSignificant-method | Class "Sam"
show-method | Class "BumSummary"
show-method | Class "TNoMSummary"
show-method | Class "SamSummary"
show-method | Class "TwoGroupStats"
show-method | Class "SingleGroup"
SingleGroup | Class "SingleGroup"
SingleGroup-class | Class "SingleGroup"
SmoothTtest | Class "SmoothTtest"
SmoothTtest-class | Class "SmoothTtest"
summary-method | Class "Bum"
summary-method | Class "MultiTtest"
summary-method | Classes for Variant T-tests
summary-method | Class "MultiWilcoxonTest"
summary-method | Class "MultiLinearModel"
summary-method | Classes "TNoM" and "fullTNoM"
summary-method | Class "Sam"
summary-method | Class "TwoGroupStats"
summary-method | Class "SingleGroup"
summary-method | Class "SmoothTtest"
TNoM | Classes "TNoM" and "fullTNoM"
TNoM-class | Classes "TNoM" and "fullTNoM"
TNoMSummary | Class "TNoMSummary"
TNoMSummary-class | Class "TNoMSummary"
TwoGroupStats | Class "TwoGroupStats"
TwoGroupStats-class | Class "TwoGroupStats"
update-method | Classes "TNoM" and "fullTNoM"