comp.delimit |
Comparing the GMYC delimitation with an alternative clustering |
compare |
Defunct functions in packaga splits |
confset.gmyc |
Calculating AIC-based support values for the GMYC clusters |
ddwtGap |
Identify the Number of Clusters in a Data Matrix. |
dimReduct |
Strip uninformative measurements |
genRefdata |
Identify the Number of Clusters in a Data Matrix. |
getWbarK |
Identify the Number of Clusters in a Data Matrix. |
gmyc |
Optimizes genetic clusters using the generalized mixed yule coalescent. |
gmyc.support |
Calculating AIC-based support values for the GMYC clusters |
plot.gmyc |
Optimizes genetic clusters using the generalized mixed yule coalescent. |
remove.terminal.zeros |
Optimizes genetic clusters using the generalized mixed yule coalescent. |
spec.list |
Optimizes genetic clusters using the generalized mixed yule coalescent. |
splits |
SPecies LImits by Threshold Statistics |
splits-defunct |
Defunct functions in packaga splits |
subsDiag |
Apply two types of diagnostics to clustered data |
summary.gmyc |
Optimizes genetic clusters using the generalized mixed yule coalescent. |
test.tr |
A test tree for use with gmyc. |