Diagenetic model including Fe, S and CH4 dynamics


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Documentation for package ‘FESDIA’ version 1.0

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FESDIA-package The FESDIA early diagenetic model.
FESDIA0D Functions to retrieve variables for the PHDIA and FESDIA model.
FESDIA1D Functions to retrieve variables for the PHDIA and FESDIA model.
FESDIAbiot Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAbudgetC Budgets for the CNPDIA or MPBDIA model.
FESDIAbudgetFe Budgets for the CNPDIA or MPBDIA model.
FESDIAbudgetN Budgets for the CNPDIA or MPBDIA model.
FESDIAbudgetO2 Budgets for the CNPDIA or MPBDIA model.
FESDIAbudgetP Budgets for the CNPDIA or MPBDIA model.
FESDIAbudgetS Budgets for the CNPDIA or MPBDIA model.
FESDIAdefault Model solutions to aid in solving new applications
FESDIAdefault2 Model solutions to aid in solving new applications
FESDIAdepth Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAdx Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAdyna Dynamic solution of the FESDIA model, calculating C, N, P, O2, Fe and S dynamics in the sediment.
FESDIAextract Functions to retrieve variables for the PHDIA and FESDIA model.
FESDIAgrid Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAirr Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAparms Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAperturb Dynamic solution of perturbed system.
FESDIAperturbFluxes Dynamic solution of perturbed system.
FESDIAperturbSettings Dynamic solution of perturbed system.
FESDIApH Functions to retrieve variables for the PHDIA and FESDIA model.
FESDIApor Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
FESDIAsolve Steady-state solution of the FESDIA model, calculating C, N, P, O2, Fe and S dynamics in the sediment.
FESDIAsvar Functions to retrieve variables for the PHDIA and FESDIA model.
image2D.FESDIAdyn Utility functions for plotting FESDIA dynamic or steady-state model output.
matplot1D Utility functions for plotting FESDIA dynamic or steady-state model output.
matplot1D-method Utility functions for plotting FESDIA dynamic or steady-state model output.
matplot1D.default Utility functions for plotting FESDIA dynamic or steady-state model output.
matplot1D.FESDIAdyn Utility functions for plotting FESDIA dynamic or steady-state model output.
PHDIA0D Functions to retrieve variables for the PHDIA and FESDIA model.
PHDIA1D Functions to retrieve variables for the PHDIA and FESDIA model.
PHDIAparms Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbation, for the FESDIA and PHDIA models
PHDIAsvar Functions to retrieve variables for the PHDIA and FESDIA model.
plot.FESDIAstd Utility functions for plotting FESDIA dynamic or steady-state model output.