plot.relationshipMatrix {synbreed} | R Documentation |
Visualization for objects of class relationshipMatrix
using a heatmap
of pairwise relatedness coefficients.
## S3 method for class 'relationshipMatrix' plot( x, y = NULL, levelbreaks = NULL, axes = TRUE, cols = NULL, groupLines = NULL, ... )
x |
Object of class |
y |
Optional for comparisons of objects of class
|
levelbreaks |
|
axes |
a |
cols |
a |
groupLines |
add positions to make groups more visible |
... |
further graphical arguments passed to function |
Valentin Wimmer and Hans-Juergen Auinger
# small pedigree ped <- simul.pedigree(gener = 4, 7) gp <- create.gpData(pedigree = ped) A <- kin(gp, ret = "add") plot(A) # big pedigree ## Not run: library(synbreedData) data(maize) K <- kin(maize, ret = "kin") U <- kin(codeGeno(maize), ret = "realized") / 2 # equal colorkeys plot(K, levelbreaks = seq(0, 2, length = 9)) plot(U, levelbreaks = seq(0, 2, length = 9)) ## End(Not run)