summary.LDdf {synbreed}R Documentation

Summary for LD objects

Description

Summary method for class ”LDdf” and ”LDmat”

Usage

## S3 method for class 'LDdf'
summary(object, cores = 1, ...)

Arguments

object

object of class LDdf or LDmat which is the output of function pairwiseLD and argument type="data.frame" or type="matrix"

cores

numeric. Specifies the number of cores for parallel computing.

...

not used

Details

Returns for each chromosome: Number of markers; mean, minimum and maximum LD measured as r2; fraction of markers with r2>0.2; average and maximum distance of number of markers

Author(s)

Valentin Wimmer and Hans-Juergen Auinger

See Also

pairwiseLD, ~~~

Examples


## Not run: 
library(synbreed)
data(maize)
maizeC <- codeGeno(maize)
maizeLD <- pairwiseLD(maizeC, chr = 1:10, type = "data.frame")
maizeLDm <- pairwiseLD(maizeC, chr = 1:10, type = "matrix")
summary(maizeLD)
summary(maizeLDm)

## End(Not run)


[Package synbreed version 0.12-14 Index]