Diagenetic Model with Simple Nitrogen, Carbon, Phosphorus Dynamics

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Documentation for package ‘CNPDIA’ version 1.0

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CNPDIA-package An early diagenetic model for C, N, P and O2 cycle in marine sediments.
CNPDIA An early diagenetic model for C, N, P and O2 cycle in marine sediments.
CNPDIA0D Functions to retrieve variables for the CNPDIA and MPBDIA model.
CNPDIA1D Functions to retrieve variables for the CNPDIA and MPBDIA model.
CNPDIAbiot Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAbudgetC Budgets for the CNPDIA or MPBDIA model.
CNPDIAbudgetN Budgets for the CNPDIA or MPBDIA model.
CNPDIAbudgetO2 Budgets for the CNPDIA or MPBDIA model.
CNPDIAbudgetP Budgets for the CNPDIA or MPBDIA model.
CNPDIAdepth Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAdx Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAdyna Dynamic solution of C, N, P and O2 dynamics in the sediment.
CNPDIAgrid Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAirr Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAparms Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAperturb Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
CNPDIAperturbFluxes Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
CNPDIAperturbSettings Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
CNPDIApor Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
CNPDIAsolve Steady-state solution of C, N, P and O2 dynamics in the sediment.
CNPDIAsvar Functions to retrieve variables for the CNPDIA and MPBDIA model.
depositLiquid Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
depositSolid Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
erodeLiquid Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
erodeSolid Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
image2D.CNPDIAdyn Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
image2D.MPBDIAdyn Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
matplot1D Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
matplot1D-method Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
matplot1D.CNPDIAdyn Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
matplot1D.default Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
matplot1D.MPBDIAdyn Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
mixLiquid Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
mixSolid Dynamic solution of C, N, P and O2 dynamics in the sediment, including perturbation events.
MPBDIA0D Functions to retrieve variables for the CNPDIA and MPBDIA model.
MPBDIA1D Functions to retrieve variables for the CNPDIA and MPBDIA model.
MPBDIAparms Functions to retrieve parameters, porosity, depth and sediment grid, irrigation and bioturbaion, for the CNPDIA and MPBDIA model.
MPBDIAsvar Functions to retrieve variables for the CNPDIA and MPBDIA model.
PeriodicFunction Utility functions for use with the CNPDIA and MPBDIA model.
plot.CNPDIAstd Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
plot.MPBDIAstd Utility functions for plotting CNPDIA and MPBDIA dynamic or steady-state model output.
StepFunction Utility functions for use with the CNPDIA and MPBDIA model.