.check_coef |
Check the validity of a vector of coefficients |
.check_varcov |
Check the validity of a vector of coefficients |
.dummy_ctm |
Dummy ctm model with random effects as offsets |
.mlt_data |
Extract information from an mlt model |
.model_name |
Create name for a specific tramME model |
.nobars |
Remove random effects terms |
.parallel_default |
Boilerplate parallel-handling function, copied from 'lme4' |
.paridx |
Match parameters with parameter groups and indeces |
.renames |
Return names for random effects parameters |
.re_data |
Create RE data |
.re_format |
Reshape unformatted random effects vectors |
.re_size |
Calculates the size of the random effect vector implied by the model and the data |
.sim_re |
Simulates random effects vector from a tramME object |
.subbars |
My own version of lme4::subbar |
.tramME |
General ME tram model |
anova.tramME |
Comparison of nested tramME models. |
BoxCoxME |
ME version of tram::BoxCox |
coef.LmME |
Extract the coefficients of the fixed effects terms of an LmME model. |
coef.tramME |
Extract the coefficients of the fixed effects terms. |
coef<-.tramME |
Set coefficients of a tramME model. |
ColrME |
ME version of tram::Colr |
confint.LmME |
Confidence intervals for LmME model parameters |
confint.tramME |
Confidence intervals for tramME model parameters |
CoxphME |
ME version of tram::Coxph |
LehmannME |
ME version of tram::Lehmann |
LmME |
ME version of tram::Lm |
logLik.tramME |
Get the log-likelihood of the model |
plot.trafo.tramME |
Plotting method for 'trafo.tramME' objects |
plot.tramME |
Plotting method for tramME objects |
PolrME |
ME version of tram::Polr |
predict.tramME |
Predict method for tramME objects |
print.anova.tramME |
Printing 'anova.tramME' table |
print.simulate.tramME |
Print method for 'simulate.tramME' objects |
print.summary.tramME |
Print method for tramME model summary |
print.tramME |
Print tramME model |
print.VarCorr.tramME |
Print method for the variance-correlation parameters of a tramME object |
ranef |
Extract the conditional modes and conditional variances of random effects |
ranef.LmME |
Extract the conditional modes of random effects of an LmME model |
ranef.tramME |
Extract the conditional modes and conditional variances of random effects |
refit.tramME |
Refit the model with a new response vector |
sigma.LmME |
Extract the SD of the error term of an LmME model. |
simulate.tramME |
Simulate outcome variable from an estimated model |
summary.tramME |
Summary method for tramME model |
SurvregME |
ME version of tram::Survreg |
trafo |
Generic method for extracting baseline transformations |
trafo.tramME |
Get the baseline transformation function and its confidence interval |
VarCorr |
Variances and correlation matrices of random effects |
VarCorr.LmME |
Variances and correlation matrices of random effects of an LmME object |
VarCorr.tramME |
Variances and correlation matrices of random effects |
varcov |
Generic method for 'varcov' |
varcov.tramME |
Extract the variance-covariance matrix of the random effects |
varcov<- |
Generic method for '"varcov<-"' |
varcov<-.tramME |
Set the values of the random effects covariance matrices of a tramME model. |
variable.names.tramME |
Return variable names. |
vcov.LmME |
Get the variance-covariance matrix of the parameters of an LmME model |
vcov.tramME |
Calculate the variance-covariance matrix of the parameters |