visGSEA {dnet} | R Documentation |
visGSEA
is supposed to visualise running enrichment score for a
given sample and a gene set. To help understand the underlying running
enrichment score, the input gene scores are also displayed. Positions
for members in the given gene set are color-coded in both displays (red
line for the positive gene scores, and green line for the negative).
visGSEA( eTerm, which_sample = 1, which_term = "GO:0006281", plot = T, orientation = c("vertical", "horizontal"), hit.linewidth = 0.5, newpage = T )
eTerm |
an object of class "eTerm" |
which_sample |
which sample will be used. It can be index or sample names |
which_term |
which term will be used. It can be index or term ID or term names |
plot |
logical to indicate whether to plot |
orientation |
the orientation of the plots. It can be either "vertical" (default) or "horizontal" |
hit.linewidth |
the line width for the hits (ie genes in the gene set) |
newpage |
logical to indicate whether to open a new page. By default, it sets to true for opening a new page |
leading genes (being sorted)
none
#visGSEA(eTerm, which_sample=1, which_term=1)