createArchitecture {MPAgenomics} | R Documentation |
Create the architecture required by aroma.* packages and copy files into created folders.
createArchitecture(dataSetName, chipType, dataSetPath, chipFilesPath, path = ".", verbose = FALSE, tags = NULL)
dataSetName |
The name of the data-set folder to create |
chipType |
The name of the used chip |
dataSetPath |
Path to the folder containing the data CEL files |
chipFilesPath |
Path to the folder containing the chip files |
path |
Path where the architecture should be created (default=".") |
verbose |
Print information during the process (default=FALSE) |
tags |
Common tag which appears in the different file names (cdf, ugp, ufl) of the chip. For no tag, use tags=NULL (default = NULL). See details for more information. |
All the cdf chip file names must follow the following rule : <chipType>,<Tags>.cdf
Multiples tags must be separated by a comma. If there is no tag, the pattern is <chipType>.cdf
Quentin Grimonprez
copyChipFiles, copyDataFiles, createAromaArchitecture
#DO NOT EXECUTE before reading of the vignette #createArchitecture("test1","GenomeWideSNP_6","./celPATH","./chipPATH",path=".",TRUE,"Full")