plot.LDmat {synbreed} | R Documentation |
LDmat
A function to visualize Linkage Disequilibrium estimates between adjacent markers or isualization of pairwise Linkage Disequilibrium (LD) estimates generated by function pairwiseLD
in a LD heatmap for each chromosome using the LDheatmap
package (Shin et al, 2006) .
## S3 method for class 'LDmat' plot(x, gpData, plotType = "map", dense = FALSE, nMarker = TRUE, centr = NULL, chr = NULL, file = NULL, fileFormat = "pdf", onefile = TRUE, ...)
x |
Object of class |
gpData |
Object of class |
plotType |
You can decide, if you like to have a plot with the LD of the neighbouring markers (option |
dense |
For |
nMarker |
For |
centr |
For |
chr |
For |
file |
Optionally a path to a file where the plot is saved to |
fileFormat |
|
onefile |
|
... |
Further arguments that could be passed to function |
For more details see at plotNeighbourLD
or LDMap
Hans-Juergen Auinger
plotNeighbourLD
, LDDist
, plotGenMap
, pairwiseLD