summary.LDdf {synbreed} | R Documentation |
Summary
method for class ”LDdf” and ”LDmat”
## S3 method for class 'LDdf' summary(object,cores=1,...) ## S3 method for class 'LDmat' summary(object,cores=1,...)
object |
object of class |
cores |
|
... |
not used |
Returns for each chromosome: Number of markers; mean, minimum and maximum LD measured as r2; fraction of markers with r2>0.2; average and maximum distance of number of markers
Valentin Wimmer and Hans-Juergen Auinger
pairwiseLD
, ~~~
## Not run: library(synbreed) data(maize) maizeC <- codeGeno(maize) maizeLD <- pairwiseLD(maizeC,chr=1:10,type="data.frame") maizeLDm <- pairwiseLD(maizeC,chr=1:10,type="matrix") summary(maizeLD) summary(maizeLDm) ## End(Not run)