plot.LDdf {synbreed} | R Documentation |
LDdf
The function visualises wheter the LD between adjacent values or visualization of pairwise Linkage Disequilibrium (LD) estimates generated by function pairwiseLD
versus marker distance. A single plot is generated for every chromosome.
## S3 method for class 'LDdf' plot(x, gpData, plotType = "dist", dense = FALSE, nMarker = TRUE, centr = NULL, chr = NULL, type = "p",breaks = NULL, n = NULL, file = NULL, fileFormat = "pdf", onefile = TRUE, colL = 2, colD = 1, ...)
x |
Object of class |
gpData |
Object of class |
plotType |
You can decide, if you like to have a plot with the LD of the neighbouring markers (option |
dense |
For |
nMarker |
For |
centr |
For |
chr |
For |
type |
For |
breaks |
For |
n |
For |
file |
Optionally a path to a file where the plot is saved to |
fileFormat |
|
onefile |
|
colL |
The color for the line if |
colD |
The color for the dots in the plot of |
... |
further graphical arguments for function |
For more Details see at plotNeighbourLD
or LDDist
Hans-Juergen Auinger
plotNeighbourLD
, LDDist
, plotGenMap
, pairwiseLD