getProjectsList {ebimetagenomics} | R Documentation |
This downloads an EMG projects list (detailed info) into an R data frame for subsequent analysis.
getProjectsList()
An R data frame containing a list of all public EMG projects, one row per project. The row names correspond to the accession ID.
getProjectSummary
, projectSamples
pl = getProjectsList() str(pl) # Find big projects biggies = pl$accession[pl$samples_count >= 100] ps = getProjectSummary(biggies[3]) # Find some 16S projects pl$accession[agrep("16S",pl$study_name)] # Look up primary accession using secondary accession pl$accession[pl$secondary_accession=="SRP047083"]