getName {seqinr} | R Documentation |
GetName returns the sequence names.
getName(object, ...)
object |
an object of the class |
... |
further arguments passed to or from other methods |
an object of class character
containing the names of the sequences
D. Charif, J.R. Lobry, L. Palmeira
citation("seqinr")
SeqAcnucWeb
, SeqFastadna
,
SeqFastaAA
, SeqFrag
# # List all available methods for getName generic function: # methods(getName) # # Example with seven DNA sequences from a FASTA file: # ff <- system.file("sequences/someORF.fsa", package = "seqinr") fs <- read.fasta(file = ff) stopifnot(all(getName(fs) == c("YAL001C", "YAL002W", "YAL003W", "YAL005C", "YAL007C", "YAL008W", "YAL009W"))) # # Example with 49 sequences from an ACNUC server: # ## Not run: # Need internet connection choosebank("emblTP") fc <- query("fc", "sp=felis catus et t=cds et o=mitochondrion") getName(fc) closebank() ## End(Not run)