cop_powersammon {cops} | R Documentation |
COPS version of sammon with powers
cop_powersammon(dis, theta = c(1, 1, -1), weightmat = 1 - diag(nrow(dis)), init = NULL, ndim = 2, ..., stressweight = 1, cordweight = 0.5, q = 1, minpts = ndim + 1, epsilon = 10, rang = NULL, verbose = 0, scale = 3, normed = TRUE, stresstype = c("default", "stress1", "rawstress", "normstress", "enormstress", "enormstress1"))
dis |
numeric matrix or dist object of a matrix of proximities |
theta |
the theta vector of powers; the first is kappa (for the fitted distances), the second lambda (for the observed proximities), the third nu (fixed to -1). If a scalar is given it is recycled for the free parameters. Defaults to 1 1 -1. |
weightmat |
(optional) a matrix of nonnegative weights |
init |
(optional) initial configuration |
ndim |
number of dimensions of the target space |
... |
additional arguments to be passed to the fitting procedure |
stressweight |
weight to be used for the fit measure; defaults to 1 |
cordweight |
weight to be used for the cordillera; defaults to 0.5 |
q |
the norm of the corrdillera; defaults to 1 |
minpts |
the minimum points to make up a cluster in OPTICS; defaults to ndim+1 |
epsilon |
the epsilon parameter of OPTICS, the neighbourhood that is checked; defaults to 10 |
rang |
range of the distances (min distance minus max distance). If NULL (default) the cordillera will be normed to each configuration's maximum distance, so an absolute value of goodness-of-clusteredness. |
verbose |
numeric value hat prints information on the fitting process; >2 is extremely verbose |
scale |
should the configuration be scale adjusted |
normed |
should the cordillera be normed; defaults to TRUE |
stresstype |
which stress to report? Defaults to explicitly normed stress |
A list with the components
stress: the stress
stress.m: default normalized stress
copstress: the weighted loss value
OC: the Optics cordillera value
parameters: the parameters used for fitting (kappa, lambda)
fit: the returned object of the fitting procedure
cordillera: the cordillera object