simpleBoxplot {RPPanalyzer} | R Documentation |
Draws boxplots of groups of an RPPA data set. Additionally a grouping order for plotting can be provided here.
simpleBoxplot(x, param, orderGrp=NULL, file = "boxplot_groups.pdf")
x |
List with RPPA data with aggregated replicate spots |
param |
Character value of one of the columns of the sampledescription matrix, i.e. x[[4]], describing the phenodata that should be analyzed |
orderGrp |
defines the ordering of the subgroups in |
file |
Title of the file that will be exported. |
Generates a PDF file
Silvia von der Heyde, Heiko Mannsperger
library(RPPanalyzer) data(dataIII) dataIII_median <- sample.median(dataIII) simpleBoxplot(x=dataIII_median, param="rank", orderGrp=c("vx","zx","yzr","rxi"), file="simpleBoxplot.pdf")