Semivariogram and Exploratory Spatial Analysis of Genetic Data


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Documentation for package ‘ggene’ version 1.0.2

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aniso A simulated haploid genotypic data set exhibiting zonal anistropy
crypho A haploid microsatellite dataset for the chestnut blight fungus _Cryphonectria parasitica_
distlag Compute custom distance lags
fitsvariog Fit an exponential model to empirical variogram
gene2geo Creates a 'ggene' object from a 'genind' object and a coordinates data frame
genocount Identifies the different genotypes in a data set
genoweight Compute a matrix of weights accounting for recurrent genotypes
ggene Semivariogram and exploratory spatial analysis of genetic data
larix1350 A dataset corresponding to the microsatellite data for a set of 189 European larch trees _Larix decidua_ sampled in the French Alps at the altitude 1350 m asl
larix2300 A dataset corresponding to the microsatellite data for a set of 175 European larch trees _Larix decidua_ sampled in the French Alps at the altitude of 2300 m asl
randsvariog Performs permutations and computes the variogram statistical envelope
sim01 A haploid genotypic data set simulated with the software IBDsim (Leblois et al 2009)
sim02 A haploid genotypic dataset simulated with the software IBDsim (Leblois et al 2009).
sim03 A haploid genotypic data set simulated with the software IBDsim (Leblois et al 2009)
subsetdata Extracts data subsets
svariog Semivariogram computation
svarmap Compute the variogram map for a genetic dataset
tab2geo Create a 'ggene' object from data frames
varioWeight Variogram computation with weighting for recurrent genotypes
Wagner The example data set used in Wagner et al (2005)