Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data


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Documentation for package ‘estimate’ version 1.0.13

Help Pages

estimate-package ESTIMATE
common_genes 10,412 common genes
estimate ESTIMATE
estimateScore Calculation of stromal, immune, and ESTIMATE scores
filterCommonGenes Intersect input data with 10,412 common genes
outputGCT Write gene expression data in GCT format
plotPurity Plot tumor purity
PurityDataAffy Affymetrix data
SI_geneset two signatures for estimate