Performs Extended Digital PCR Analysis


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Documentation for package ‘edpcr’ version 0.9

Help Pages

conv Convert between parameterisations
conv.mcmc Convert MCMC chain between parameterisations
cqmc Mode and/or MCMC sample of Cq-dPCR posterior
detrend Detrend Cq data
Exp37a Digital PCR output file
fetch Extract Cq data
get.pars0 Get initial Cq-dPCR parameters
llcq Log-posterior for Cq-dPCR data
mu2lam Calculate lambda of Conway Maxwell Poisson distribution from mean and dispersion
p2lam Calculate lambda of Conway Maxwell Poisson distribution from probability of 0 sucesses
p2mu Calculate mean of Conway Maxwell Poisson distribution from probability of 0 sucesses
plotall Plot of Cq density/densities and/or density plot of data.
plotden Density plot of Cq data
plotfun Plot of Cq distribution
prep Create cqdat object
rcq Simulate Cq data