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| classSNitch-package | Package for the autonomous classification of RNA structure change. |
| classifyRNA | classifyRNA |
| classify_default | classify_default |
| classSNitch | Package for the autonomous classification of RNA structure change. |
| getChange | getChangeVar |
| getChangeRange | getChangeRange |
| getChangeVar | getChangeVar |
| getContiguous | getContiguous |
| getESDC | getESDC |
| getFeatures | getFeatures |
| getL2norm | getL2norm |
| getMagCC | getMagCC |
| getPatternCC | getPatternCC |
| getTimeWarping | getTimeWarping |
| mutmap | Consensus classification and features for example RNA SHAPE traces. Features calculated from SHAPE traces from the RNA Mapping Database. Parameters calculated using getFeatures function in classSNitch package. Consensus classification determined using crowd-sourced manual classification. |
| normalize | normalize |
| predict | predict.classifyRNA |
| predict.classifyRNA | predict.classifyRNA |
| reduceNoise | reduceNoise |
| shape_ex | 16S rRNA four-way junction wild-type and mutant SHAPE data from mutate and map experiments in the RMDB. |
| Var | getChangeVar |