RepeatABEL-package |
GWAS for repeated observations on related individuals |
compute.GRM |
Computes a Genetic Relationship Matrix from a GenABEL object |
constructV |
Constructs the (co)variance matrix for y |
Create_gwaa_scan |
Creates a scan.gwaa object |
flycatchers |
10,000 SNPs from 849 collared flycatchers |
gen.data |
Example GenABEL data |
Phen.Data |
Example phenotype data |
preFitModel |
Fits a linear mixed model (without fixed SNP effects) and computes the fitted variance-covariance matrix for later use in the rGLS function. |
RepeatABEL |
GWAS for repeated observations on related individuals |
rGLS |
GWAS for Studies having Repeated Measurements on Related Individuals |
simulate_PhenData |
Simulation function for the RepeatABEL package. |
SmoothSNPmatrix |
Imputes column means to missing genotypes |
thinned.flycatchers |
10,000 SNPs from 200 collared flycatchers |