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| phrapl-package | Phylogeographic analysis using approximated likelihoods |
| assignFile | A description for applying phrapl to a test dataset |
| CalculateModelAverages | CalculateModelAverages |
| ConcatenateResults | ConcatenateResults |
| example | A description for applying phrapl to a test dataset |
| GenerateMigrationArrayMap | GenerateMigrationArrayMap |
| GenerateMigrationIndividual | Generate a migrationArray |
| GenerateMigrationIndividuals | Generate a migrationArray |
| GetPermutationWeightsAcrossSubsamples | Calculate tip label degeneracy weights for a set of trees |
| grid.search | Computes AIC for a given model or models on a fixed set of parameters |
| GridSearch | Computes AIC for a given model or models on a fixed set of parameters |
| Gridsearch | Computes AIC for a given model or models on a fixed set of parameters |
| gridsearch | Computes AIC for a given model or models on a fixed set of parameters |
| MergeTrees | MergeTrees |
| migrationArray | A description for applying phrapl to a test dataset |
| MigrationArray_3pop_3K | Cached migrationArrays |
| migrationArray_3pop_3K | Cached migrationArrays |
| MigrationArray_4pop_3K | Cached migrationArrays |
| migrationArray_4pop_3K | Cached migrationArrays |
| MsIndividualParameters | MsIndividualParameters |
| phrapl | Phylogeographic analysis using approximated likelihoods |
| phrapl-example | A description for applying phrapl to a test dataset |
| plot.model | Create a 3D spinning plot for a given model |
| PlotModel | Create a 3D spinning plot for a given model |
| Plotmodel | Create a 3D spinning plot for a given model |
| plotmodel | Create a 3D spinning plot for a given model |
| popAssignments | A description for applying phrapl to a test dataset |
| prep.subsampling | Subsample tips from a tree |
| prep.subsampling.files | Subsample tips from a tree |
| PrepSubsampling | Subsample tips from a tree |
| Prepsubsampling | Subsample tips from a tree |
| prepsubsampling | Subsample tips from a tree |
| PrepSubsamplingFiles | Subsample tips from a tree |
| Prepsubsamplingfiles | Subsample tips from a tree |
| prepsubsamplingfiles | Subsample tips from a tree |
| RunRaxml | RunRaxml |
| RunSeqConverter | RunSeqConverter |
| save.movie | This function converts a 3D tree plot into an animated gif, suitable for inserting into a slide presentation, putting on a website, etc. |
| SaveMovie | This function converts a 3D tree plot into an animated gif, suitable for inserting into a slide presentation, putting on a website, etc. |
| Savemovie | This function converts a 3D tree plot into an animated gif, suitable for inserting into a slide presentation, putting on a website, etc. |
| savemovie | This function converts a 3D tree plot into an animated gif, suitable for inserting into a slide presentation, putting on a website, etc. |
| TestData | A description for applying phrapl to a test dataset |
| trees | A description for applying phrapl to a test dataset |