Classifies RNA Structure Change in Chemical Mapping Data

Documentation for package ‘classSNitch’ version 1.0.0

classSNitch-package	Package for the autonomous classification of RNA structure change.
classifyRNA	classifyRNA
classify_default	classify_default
classSNitch	Package for the autonomous classification of RNA structure change.
getChange	getChangeVar
getChangeRange	getChangeRange
getChangeVar	getChangeVar
getContiguous	getContiguous
getESDC	getESDC
getFeatures	getFeatures
getL2norm	getL2norm
getMagCC	getMagCC
getPatternCC	getPatternCC
getTimeWarping	getTimeWarping
mutmap	Consensus classification and features for example RNA SHAPE traces. Features calculated from SHAPE traces from the RNA Mapping Database. Parameters calculated using getFeatures function in classSNitch package. Consensus classification determined using crowd-sourced manual classification.
normalize	normalize
predict	predict.classifyRNA
predict.classifyRNA	predict.classifyRNA
reduceNoise	reduceNoise
shape_ex	16S rRNA four-way junction wild-type and mutant SHAPE data from mutate and map experiments in the RMDB.
Var	getChangeVar