aci | A/Ci curves |
annualDB | Miscanthus dry biomass data. |
annualDB2 | Miscanthus dry biomass data. |
aq | A/Q curves |
ballBerry | Coupled photosynthesis-stomatal conductance simulation |
BioGro | Biomass crops growth simulation |
boo14.200 | Weather change Iowa Mesonet |
c3CanA | Simulates canopy assimilation for C3 canopies |
c3photo | Simulates C3 photosynthesis |
c4photo | Coupled photosynthesis-stomatal conductance simulation |
c4photoR | Coupled photosynthesis-stomatal conductance simulation |
CanA | Simulates canopy assimilation |
canopyParms | Biomass crops growth simulation |
Century | This function implements the Century model from Parton. |
CenturyC | This function implements the Century model from Parton. |
centuryParms | Biomass crops growth simulation |
cmi04 | Weather data for Champaign Illinois |
cmi05 | Weather data for Champaign Illinois |
cmi0506 | Weather data |
cmi06 | Weather data for Champaign Illinois |
cmiWet | Weather data |
constrOpBioGro | Optimization of dry biomass partitioning coefficients. |
doy124 | Weather data |
eC4photo | C4 photosynthesis simulation (von Caemmerer model) |
eCanA | Simulates canopy assimilation (von Caemmerer model) |
EngWea94i | Weather data corresponding to a paper by Clive Beale (see source). |
EngWea94rf | Weather data corresponding to a paper by Clive Beale (see source). |
idbp | Initial Dry Biomass Partitioning Coefficients |
is.leap | Simulates the hourly conditions from daily |
isom | This function implements the Century model from Parton. |
LayET | Weather data |
lightME | Simulates the light macro environment |
lnParms | Simulates canopy assimilation |
MaizeCAllocParms | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
MaizeGro | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
MaizeNitroParms | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
MaizePhenoParms | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
MaizePhotoParms | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
MaizeSeneParms | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
MCMCBioGro | Simulated Annealing and Markov chain Monte Carlo for estimating parameters for Biomass Growth |
MCMCc4photo | Markov chain Monte Carlo for C4 photosynthesis parameters |
MCMCEc4photo | Markov chain Monte Carlo for C4 photosynthesis parameters |
mOpc3photo | Multiple optimization of assimilation (or stomatal conductance) curves. |
mOpc4photo | Multiple optimization of C4 photosynthesis. |
nitroParms | Biomass crops growth simulation |
obsBea | Miscanthus assimilation field data |
obsBeaC | Complete Miscanthus assimilation field data |
obsNaid | Miscanthus assimilation data |
OpBioGro | Optimization of dry biomass partitioning coefficients. |
Opc3photo | Optimize parameters of the C3 photosynthesis model. |
Opc4photo | Optimization of C4 photosynthesis parameters |
OpEC4photo | Optimization of C4 photosynthesis parameters (von Caemmerer model) |
phenoConv | Simulation of Maize, Growth, LAI, Photosynthesis and phenology |
phenoParms | Biomass crops growth simulation |
photoParms | Biomass crops growth simulation |
plot.BioGro | Plotting function for BioGro objects |
plot.MCMCBioGro | Plotting function fo the MCMCBioGro class |
plot.MCMCc4photo | Plotting function for MCMCc4photo objects |
plot.MCMCEc4photo | Plottin function for MCMCEc4photo objects |
plot.mOpc4photo | Multiple optimization of C4 photosynthesis. |
plot.Opc3photo | Optimize parameters of the C3 photosynthesis model. |
plot.Opc4photo | Optimization of C4 photosynthesis parameters |
plotAC | Plotting function for A/Ci curves |
plotAQ | Optimization of C4 photosynthesis parameters |
predict.Opc3photo | Optimize parameters of the C3 photosynthesis model. |
predict.Opc4photo | Optimization of C4 photosynthesis parameters |
print.BioGro | Biomass crops growth simulation |
print.MCMCBioGro | Simulated Annealing and Markov chain Monte Carlo for estimating parameters for Biomass Growth |
print.MCMCc4photo | Markov chain Monte Carlo for C4 photosynthesis parameters |
print.MCMCEc4photo | Print an MCMCEc4photo object |
print.mOpc4photo | Multiple optimization of C4 photosynthesis. |
print.OpBioGro | Print an OpBioGro object |
print.Opc3photo | Optimize parameters of the C3 photosynthesis model. |
print.Opc4photo | Optimization of C4 photosynthesis parameters |
print.OpEC4photo | Print an OpEC4photo object |
print.summary.Opc4photo | Optimization of C4 photosynthesis parameters |
Rmiscanmod | RUE-based model to calculate miscanthus growth and yield. |
rootDist | soil multi-layered |
RsqC4photo | R-squared for C4 photosynthesis simulation (Collatz model) |
RsqEC4photo | R-squared for C4 photosynthesis simulation (von Caemmerer model) |
RssBioGro | Residual sum of squares for BioGro. |
RUEmod | Radiation use efficiency based model |
RUEmodMY | Radiation use efficiency based model |
seneParms | Biomass crops growth simulation |
showSoilType | Biomass crops growth simulation |
simDat2 | Simulated biomass data. |
SoilEvapo | Soil Evaporation |
soilML | soil multi-layered |
soilParms | Biomass crops growth simulation |
SoilType | Biomass crops growth simulation |
somc | This function implements the Century model from Parton. |
summary.OpBioGro | Optimization of dry biomass partitioning coefficients. |
summary.Opc4photo | Optimization of C4 photosynthesis parameters |
summary.OpEC4photo | Optimization of C4 photosynthesis parameters (von Caemmerer model) |
sunML | Sunlit shaded multi-layer model |
valid_dbp | Validate dry biomass partitioning coefficients |
WD1979 | Randomly picked dataset from the Illinois area from 1979 |
weach | Simulates the hourly conditions from daily |
weach_imn | Weather change Iowa Mesonet |
weach_imn2 | Weather change Iowa Mesonet |
weather04 | Weather data for Champaign Illinois |
weather05 | Weather data for Champaign Illinois |
weather06 | Weather data for Champaign Illinois |
wsRcoef | Simple function to illustrate soil water content effect on plant water stress. |
wtrstr | Simple function to illustrate soil water content effect on plant water stress. |