Tools for importing and manipulating NONMEM data.


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Documentation for package ‘RNMImport’ version 4.0-27

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A C D G I L N R S

-- A --

addDerivedCategorical Add binned variable to NONMEM object
addDerivedCategorical-method Standard/"basic" NONMEM individual problem
addDerivedCategorical-method Standard/"basic" NONMEM 7 individual problem
addDerivedCategorical-method NONMEM run container class
addDerivedCategorical-method Class for holding simulation problems that don't fit models
addDerivedCategorical-method Class "NMSimModel"
addDerivedCategorical-method Class "NMSimModelNM7"
addedData Get added data
addedData-method Class "NMProblem"
addedData-method NONMEM run container class
addVarDescription Adds a variable description
applyDataSubset Modify and apply data subsets
augmentDataSubset<- Modify and apply data subsets
augmentDefaultDataSubset Configure the global data subset attached to NONMEM problems on loading
availableLogs Logging utilities

-- C --

closeLogConnection Logging utilities

-- D --

dataSubset Modify and apply data subsets
dataSubset<- Modify and apply data subsets
defaultDataSubset Configure the global data subset attached to NONMEM problems on loading

-- G --

getControlStatements Various miscellaneous "getter"/extractor functions
getControlStatements-method Class "NMProblem"
getControlStatements-method NONMEM run container class
getControltext Various miscellaneous "getter"/extractor functions
getEstimateCov Returns variance-covariance matrix, if available, from a NONMEM object
getEstimateCov-method Standard/"basic" NONMEM individual problem
getEstimateCov-method Standard/"basic" NONMEM 7 individual problem
getEstimateCov-method NONMEM run container class
getFileinfo Various miscellaneous "getter"/extractor functions
getIterations Extract parameter estimate iteration information from a given NONMEM problem
getIterations-method Extract parameter estimate iteration information from a given NONMEM problem
getMethodNames Get method names
getMethodNames-method Standard/"basic" NONMEM 7 individual problem
getMethodNames-method NONMEM run container class
getMethodNames-method Class "NMSimModelNM7"
getNmFileExtensions Gets allowed NONMEM file extensions
getNmPath Gets a user defined path
getNmVersion Various miscellaneous "getter"/extractor functions
getNmVersion-method Class "NMProblem"
getNmVersion-method NONMEM run container class
getObjective Retrieve objective function value
getObjective-method Standard/"basic" NONMEM individual problem
getObjective-method Standard/"basic" NONMEM 7 individual problem
getObjective-method NONMEM run container class
getObjective-method Class "NMSimModel"
getObjective-method Class "NMSimModelNM7"
getOmegas Retrieve OMEGA estimates, initial values of
getOmegas-method Standard/"basic" NONMEM individual problem
getOmegas-method Standard/"basic" NONMEM 7 individual problem
getOmegas-method NONMEM run container class
getOmegas-method Class for holding simulation problems that don't fit models
getOmegas-method Class "NMSimModel"
getOmegas-method Class "NMSimModelNM7"
getOmegas-method Auxilliary class for representing control file statements
getProblem Extract an individual NONMEM problem
getReporttext Various miscellaneous "getter"/extractor functions
getSigmas A generic function that extracts sigma estimates (and initial estimates and standard errors if specified) from a NONMEM object.
getSigmas-method Standard/"basic" NONMEM individual problem
getSigmas-method Standard/"basic" NONMEM 7 individual problem
getSigmas-method NONMEM run container class
getSigmas-method Class for holding simulation problems that don't fit models
getSigmas-method Class "NMSimModel"
getSigmas-method Class "NMSimModelNM7"
getSigmas-method Auxilliary class for representing control file statements
getSimInfo Various miscellaneous "getter"/extractor functions
getSimInfo Get Simulation Information.
getSimInfo-method NONMEM run container class
getSimInfo-method Class for holding simulation problems that don't fit models
getSimInfo-method Class "NMSimModel"
getSimInfo-method Class "NMSimModelNM7"
getThetas A generic function that extracts theta estimates (and initial estimates and standard errors if specified) from a NONMEM object.
getThetas-method Standard/"basic" NONMEM individual problem
getThetas-method Standard/"basic" NONMEM 7 individual problem
getThetas-method NONMEM run container class
getThetas-method Class for holding simulation problems that don't fit models
getThetas-method Class "NMSimModel"
getThetas-method Class "NMSimModelNM7"
getThetas-method Auxilliary class for representing control file statements
getVarDescription Gets a variable description

-- I --

importNm Import a NONMEM run
importNm7Tables Import new NONMEM 7 table files
importNmInter Import NONMEM "inter" file
importNmMod Parse a NONMEM control file
importNmReport Import the information in an output report file
imposeCategoryFormat Forces the data in a NONMEM object to conform to the variable formats specified in the metadata.
imposeCategoryFormat-method Standard/"basic" NONMEM individual problem
imposeCategoryFormat-method Standard/"basic" NONMEM 7 individual problem
imposeCategoryFormat-method NONMEM run container class
imposeCategoryFormat-method Class for holding simulation problems that don't fit models
imposeCategoryFormat-method Class "NMSimModel"
imposeCategoryFormat-method Class "NMSimModelNM7"

-- L --

logConnection Logging utilities
logMessage Logging utilities

-- N --

NMBasicModel-class Standard/"basic" NONMEM individual problem
NMBasicModelNM7-class Standard/"basic" NONMEM 7 individual problem
nmData Extract input and / or output data tables from a NONMEM object
nmData-method Standard/"basic" NONMEM individual problem
nmData-method Standard/"basic" NONMEM 7 individual problem
nmData-method NONMEM run container class
nmData-method Class for holding simulation problems that don't fit models
nmData-method Class "NMSimModel"
nmData-method Class "NMSimModelNM7"
nmDatabyVarType Get NONMEM data by variable type
nmDatabyVarType-method Class "NMProblem"
nmDatabyVarType-method NONMEM run container class
nmModel-class Auxilliary class for representing control file statements
NMProblem-class Class "NMProblem"
NMRun-class NONMEM run container class
nmRunReport-class Auxilliary classes for representing report file statements
NMSimDataGen-class Class for holding simulation problems that don't fit models
NMSimModel-class Class "NMSimModel"
NMSimModelNM7-class Class "NMSimModelNM7"

-- R --

readNmData Read NONMEM dataset removing any "IGNORE" rows and dealing with (possibly repeated) headers...
removeNmPath Removes a user specified path
runRNMImportTests run package regression tests

-- S --

setDefaultDataSubset Configure the global data subset attached to NONMEM problems on loading
setLogConnection Logging utilities
setLogFile Logging utilities
setNmFileExtensions file allowed file extensions
setNmPath Stores a user specified path
setVarDescription Sets new variable characteristics
show-method Standard/"basic" NONMEM individual problem
show-method Standard/"basic" NONMEM 7 individual problem
show-method NONMEM run container class
show-method Class for holding simulation problems that don't fit models
show-method Class "NMSimModel"
show-method Class "NMSimModelNM7"