parallel DEMC


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Documentation for package ‘twDEMC’ version 0.9.212

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A C D F G I L M N O P R S T U

twDEMC-package parallel DEMC

-- A --

as.mcmc.list.twDEMC as mcmc list twDEMC
as.mcmc.list.twDEMCPops as mcmc list twDEMCPops

-- C --

calcBaseTemp calcBaseTemp
calcComponentTemp calcComponentTemp
calcComponentTempMat calcComponentTempMat
calcDEMCTemp calcDEMCTemp
calcDEMCTempProp calcDEMCTempProp
calcM0twDEMC calcM0twDEMC
calcPSubSpacesHME calcPSubSpacesHME
calcPSubSpacesVol calcPSubSpacesVol
calcStreamTemp calcStreamTemp
calcTemperatedLogDen calcTemperatedLogDen
calcTemperatedLogDen.default calcTemperatedLogDen default
calcTemperatedLogDen.twDEMCPops calcTemperatedLogDen twDEMCPops
calcTemperatedLogDenChains calcTemperatedLogDenChains
calcTemperatedLogDenChains.array calcTemperatedLogDenChains array
calcTemperatedLogDenChains.twDEMC calcTemperatedLogDenChains twDEMC
checkProblemsGelman1 checkProblemsGelman1
checkProblemsSpectral checkProblemsSpectral
combinePops combinePops
combinePops.twDEMC combinePops twDEMC
combineTwDEMCPops combineTwDEMCPops
completeResCompVec completeResCompVec
concatPops concatPops
concatPops.twDEMCPops concatPops twDEMCPops
constrainCfStack constrainCfStack
constrainNStack constrainNStack

-- D --

dDistr dDistr
den2dCor den2dCor
den2dCorEx Example model for artificial inverse experiment with changing correlation and scales in variances
denBoth denBoth
denRich denRich
denRichPrior denRichPrior
denSparse denSparse
denSparsePrior denSparsePrior
dinvchisq dinvchisq
divideTwDEMCPop divideTwDEMCPop
divideTwDEMCPops divideTwDEMCPops
divideTwDEMCSACont divideTwDEMCSACont
divideTwDEMCStep divideTwDEMCStep
dummyTwDEMCModel dummyTwDEMCModel

-- F --

fDenMultiMode fDenMultiMode
findSplit findSplit

-- G --

getBestModelIndex getBestModelIndex
getBestModelIndices getBestModelIndices
getCurrentTemp getCurrentTemp
getCurrentTemp.twDEMC getCurrentTemp twDEMC
getCurrentTemp.twDEMCPops getCurrentTemp twDEMCPops
getNBlocks getNBlocks
getNBlocks.twDEMC getNBlocks twDEMC
getNBlocks.twDEMCPops getNBlocks twDEMCPops
getNChains getNChains
getNChains.twDEMC getNChains twDEMC
getNChains.twDEMCPops getNChains twDEMCPops
getNChainsPop getNChainsPop
getNChainsPop.twDEMC getNChainsPop twDEMC
getNChainsPop.twDEMCPops getNChainsPop twDEMCPops
getNGen getNGen
getNGen.twDEMC getNGen twDEMC
getNGen.twDEMCPops getNGen twDEMCPops
getNParms getNParms
getNParms.twDEMC getNParms twDEMC
getNParms.twDEMCPops getNParms twDEMCPops
getNPops getNPops
getNPops.twDEMC getNPops twDEMC
getNPops.twDEMCPops getNPops twDEMCPops
getNSamples getNSamples
getNSamples.twDEMC getNSamples twDEMC
getNSamples.twDEMCPops getNSamples twDEMCPops
getNSamplesSpace getNSamplesSpace
getNSamplesSpace.twDEMCPops getNSamplesSpace twDEMCPops
getNSpaces getNSpaces
getNSpaces.twDEMCPops getNSpaces twDEMCPops
getParBoundsPop getParBoundsPop
getParBoundsPop.twDEMCPops getParBoundsPop twDEMCPops
getSpacesPop getSpacesPop
getSpacesPop.twDEMCPops getSpacesPop twDEMCPops
getSubSpaces getSubSpaces

-- I --

initZtwDEMCExt initZtwDEMCExt
initZtwDEMCExt.matrix initZtwDEMCExt matrix
initZtwDEMCExt.twDEMC initZtwDEMCExt twDEMC
initZtwDEMCNormal initZtwDEMCNormal
initZtwDEMCSub initZtwDEMCSub
initZtwDEMCSub.matrix initZtwDEMCSub matrix
initZtwDEMCSub.twDEMC initZtwDEMCSub twDEMC
iSample2time iSample2time
isLogDenDrift isLogDenDrift

-- L --

logDenGaussian logDenGaussian

-- M --

marginals1d marginals1d
marginals2d marginals2d
marginals3d marginals3d
mcmcListApply mcmcListApply
modTwTwoDenEx1 modTwTwoDenEx1

-- N --

normConstLaplace normConstLaplace
normConstLaplaceBridge normConstLaplaceBridge

-- O --

orderLogDen orderLogDen

-- P --

plotChainPopMoves plotChainPopMoves
plotThinned plotThinned
plotThinned.mcmc.list plotThinned mcmc list
popApplyTwDEMC popApplyTwDEMC
popMeansTwDEMC popMeansTwDEMC

-- R --

replaceZinitCases replaceZinitCases
replaceZinitNonFiniteLogDens replaceZinitNonFiniteLogDens
replaceZinitNonFiniteLogDensLastStep replaceZinitNonFiniteLogDensLastStep
rinvchisq rinvchisq

-- S --

squeeze squeeze
squeeze.twDEMCPops squeeze twDEMCPops
stackChains stackChains
stackChains.array stackChains array
stackChains.mcmc.list stackChains mcmc list
stackChains.twDEMC stackChains twDEMC
stackChains.twDEMCPops stackChains twDEMCPops
stackChainsPop stackChainsPop
stackChainsPop.twDEMC stackChainsPop twDEMC
stackChainsPop.twDEMCPops stackChainsPop twDEMCPops
stackPops stackPops
stackPops.twDEMCPops stackPops twDEMCPops
stackPopsInSpace stackPopsInSpace
stackPopsInSpace.twDEMCPops stackPopsInSpace twDEMCPops
subChains subChains
subChains.twDEMC subChains twDEMC
subPops subPops
subPops.twDEMCPops subPops twDEMCPops
subset.twDEMC subset twDEMC
subset.twDEMCPops subset twDEMCPops
subsetF subsetF
subsetF.twDEMCPops subsetF twDEMCPops
subsetTail subsetTail
subsetTail.twDEMCPops subsetTail twDEMCPops
sumLogDenComp sumLogDenComp

-- T --

thin.twDEMC thin twDEMC
thin.twDEMCPops thin twDEMCPops
thinN thinN
thinN.mcmc.list thinN mcmc list
time2iSample time2iSample
transNormPopt transNormPopt
transNormPopt.default transNormPopt default
transOrigPopt transOrigPopt
transOrigPopt.array transOrigPopt array
transOrigPopt.default transOrigPopt default
transOrigPopt.matrix transOrigPopt matrix
transOrigPopt.mcmc.list transOrigPopt mcmc list
transOrigPopt.twDEMC transOrigPopt twDEMC
twCalcLogDenPar twCalcLogDenPar
twCalcLogDensPar twCalcLogDensPar
twCoefLnorm twCoefLnorm
twCoefLnormCi twCoefLnormCi
twCoefLnormMLE twCoefLnormMLE
twConstrainPoptDistr twConstrainPoptDistr
twDEMC parallel DEMC
twDEMCBlock twDEMCBlock
twDEMCBlock.array twDEMCBlock array
twDEMCBlock.twDEMC twDEMCBlock twDEMC
twDEMCBlock.twDEMCPops twDEMCBlock twDEMCPops
twDEMCBlockInt twDEMCBlockInt
twdemcEx1 Example DEMC result
twDEMCSA twDEMCSA
twDEMCSACont twDEMCSACont
twLinreg1 Artificial data and parameters for DEMC-Example
twMergePops twMergePops
twQuantiles2Coef twQuantiles2Coef
twRunDEMCSA twRunDEMCSA
twTwoDenEx1 Example model for artificial inverse experiment with two densities
twVarDistrLevels twVarDistrLevels
twVarDistrVec twVarDistrVec

-- U --

updateBlockTwDEMC updateBlockTwDEMC