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| comp.delimit | Comparing the GMYC delimitation with an alternative clustering |
| compare | Defunct functions in packaga splits |
| confset.gmyc | Calculating AIC-based support values for the GMYC clusters |
| ddwtGap | Identify the Number of Clusters in a Data Matrix. |
| dimReduct | Strip uninformative measurements |
| genRefdata | Identify the Number of Clusters in a Data Matrix. |
| getWbarK | Identify the Number of Clusters in a Data Matrix. |
| gmyc | Optimizes genetic clusters using the generalized mixed yule coalescent. |
| gmyc.support | Calculating AIC-based support values for the GMYC clusters |
| plot.gmyc | Optimizes genetic clusters using the generalized mixed yule coalescent. |
| remove.terminal.zeros | Optimizes genetic clusters using the generalized mixed yule coalescent. |
| spec.list | Optimizes genetic clusters using the generalized mixed yule coalescent. |
| splits | SPecies LImits by Threshold Statistics |
| splits-defunct | Defunct functions in packaga splits |
| subsDiag | Apply two types of diagnostics to clustered data |
| summary.gmyc | Optimizes genetic clusters using the generalized mixed yule coalescent. |
| test.tr | A test tree for use with gmyc. |