a | URA3_Raw_trim |
ask_plot_simple | Ask user if they want to plot |
a_15 | URA3_Raw_extratrim_15 |
b | CDC13-1_Raw_trim |
b_15 | CDC13-1_Raw_extratrim_15 |
funcARRAYTRANS | Creates and transposes an array |
funcARRAYTRANS_J | Creates and transposes an array (JHM) |
funcColORF | Adds NA values at the end of an ORF to give consistent Col length for an array |
funcGENE | Gives gene names from ORF names |
funcIDORDER | Order by ORF and ID coloumn |
funcNoORF | Gives number of repeats for each ORF |
funcNoSum | Gives running total for the number of repeats for each ORF |
funcNoTime | Gives number of time points for a repeat |
funcREMOVE | Filter by Screen Name, Temprature and Master Plate Number |
funcRowRep | Adds NA values at the end of a repeat to give consistent row length for an array |
funcSCALING | Scales data by maximum theroetical value for IOD |
funcXY | Sorts data into array with correct dimensions |
funcXY_J | Sorts data into array with correct dimensions (JHM) |
IHM_main | Runs IHM C code |
JHM_main | Runs JHM C code |
JHM_postpro | Proforms post processing for JHM |
plot_IHM_simple | plot IHM_simple_C output |
plot_JHM_simple | plot JHM_simple_C output |
plot_SHM_simple | plot SHM_simple_C output |
priors_IHM | priors_IHM |
priors_JHM | priors_JHM |
priors_SHM | priors_SHM |
qfa.variables | Gives experiment variables from Colonyzer output |
SHM_main | Runs SHM C code |
SHM_postpro | Proforms post processing for SHM |