A B C D E F G L M N O P R S T V W misc
| pomp-package | Partially-observed Markov processes |
| abc | The ABC algorithm |
| abc-abc | The ABC algorithm |
| abc-class | The ABC algorithm |
| abc-method | The ABC algorithm |
| abc-methods | Methods of the "abc" class |
| abc-pomp | The ABC algorithm |
| abc-probed.pomp | The ABC algorithm |
| as-method | Methods of the "pfilterd.pomp" class |
| as-method | Methods of the "pomp" class |
| as-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| as.data.frame.pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| as.data.frame.pomp | Methods of the "pomp" class |
| basic.probes | Some probes for partially-observed Markov processes |
| bbs | SIR models. |
| blowflies | Model for Nicholson's blowflies. |
| blowflies1 | Model for Nicholson's blowflies. |
| blowflies2 | Model for Nicholson's blowflies. |
| bsmc | Liu and West Bayesian Particle Filter |
| bsmc-method | Liu and West Bayesian Particle Filter |
| bsmc-pomp | Liu and West Bayesian Particle Filter |
| bspline.basis | B-spline bases |
| coef-method | Methods of the "pomp" class |
| coef-pomp | Methods of the "pomp" class |
| coef<- | Methods of the "pomp" class |
| coef<--method | Methods of the "pomp" class |
| coef<--pomp | Methods of the "pomp" class |
| coerce-method | Methods of the "pfilterd.pomp" class |
| coerce-method | Methods of the "pomp" class |
| coerce-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| compare.mif | Methods of the "mif" class |
| compare.pmcmc | Methods of the "pmcmc" class |
| cond.logLik | Methods of the "pfilterd.pomp" class |
| cond.logLik-method | Methods of the "pfilterd.pomp" class |
| cond.logLik-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| continue | The MIF algorithm |
| continue-abc | The ABC algorithm |
| continue-method | The ABC algorithm |
| continue-method | The MIF algorithm |
| continue-method | The PMCMC algorithm |
| continue-mif | The MIF algorithm |
| continue-pmcmc | The PMCMC algorithm |
| conv.rec | Methods of the "mif" class |
| conv.rec-abc | Methods of the "abc" class |
| conv.rec-method | Methods of the "abc" class |
| conv.rec-method | Methods of the "mif" class |
| conv.rec-method | Methods of the "pmcmc" class |
| conv.rec-mif | Methods of the "mif" class |
| conv.rec-pmcmc | Methods of the "pmcmc" class |
| dacca | Model of cholera transmission for historic Bengal. |
| data.array | Methods of the "pomp" class |
| data.array-method | Methods of the "pomp" class |
| data.array-pomp | Methods of the "pomp" class |
| data.frame-pomp | Partially-observed Markov process object. |
| deulermultinom | Euler-multinomial death process |
| discrete.time.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
| dprior-abc | Methods of the "abc" class |
| dprior-method | Methods of the "abc" class |
| eff.sample.size | Methods of the "pfilterd.pomp" class |
| eff.sample.size-method | Methods of the "pfilterd.pomp" class |
| eff.sample.size-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| euler.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
| euler.sir | SIR models. |
| eulermultinom | Euler-multinomial death process |
| filter.mean | Methods of the "pfilterd.pomp" class |
| filter.mean-method | Methods of the "pfilterd.pomp" class |
| filter.mean-method | Methods of the "pmcmc" class |
| filter.mean-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| filter.mean-pmcmc | Methods of the "pmcmc" class |
| gillespie.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
| gillespie.sir | SIR models. |
| gompertz | Gompertz model with log-normal observations. |
| logLik-method | Methods of the "mif" class |
| logLik-method | Methods of the "pfilterd.pomp" class |
| logLik-method | Methods of the "pmcmc" class |
| logLik-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| logLik-method | Trajectory matching |
| logLik-mif | Methods of the "mif" class |
| logLik-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| logLik-pmcmc | Methods of the "pmcmc" class |
| logLik-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| logLik-traj.matched.pomp | Trajectory matching |
| logmeanexp | The log-mean-exp trick |
| LondonYorke | Historical childhood disease incidence data |
| matrix-pomp | Partially-observed Markov process object. |
| mif | The MIF algorithm |
| mif-method | The MIF algorithm |
| mif-methods | Methods of the "mif" class |
| mif-mif | The MIF algorithm |
| mif-pfilterd.pomp | The MIF algorithm |
| mif-pomp | The MIF algorithm |
| nlf | Fit Model to Data Using Nonlinear Forecasting (NLF) |
| numeric-pomp | Partially-observed Markov process object. |
| obs | Methods of the "pomp" class |
| obs-method | Methods of the "pomp" class |
| obs-pomp | Methods of the "pomp" class |
| onestep.dens | Plug-ins for dynamical models based on stochastic Euler algorithms |
| onestep.sim | Plug-ins for dynamical models based on stochastic Euler algorithms |
| ou2 | Two-dimensional discrete-time Ornstein-Uhlenbeck process |
| parmat | Create a matrix of parameters |
| partrans | Methods of the "pomp" class |
| partrans-method | Methods of the "pomp" class |
| partrans-pomp | Methods of the "pomp" class |
| periodic.bspline.basis | B-spline bases |
| pfilter | Particle filter |
| pfilter-method | Particle filter |
| pfilter-pfilterd.pomp | Particle filter |
| pfilter-pomp | Particle filter |
| pfilterd.pomp-class | Particle filter |
| plot-abc | Methods of the "abc" class |
| plot-bsmcd.pomp | Liu and West Bayesian Particle Filter |
| plot-method | Methods of the "abc" class |
| plot-method | Liu and West Bayesian Particle Filter |
| plot-method | Methods of the "mif" class |
| plot-method | Methods of the "pmcmc" class |
| plot-method | Methods of the "pomp" class |
| plot-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| plot-mif | Methods of the "mif" class |
| plot-pmcmc | Methods of the "pmcmc" class |
| plot-pomp | Methods of the "pomp" class |
| plot-probe.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| plot-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| plot-spect.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| plugins | Plug-ins for dynamical models based on stochastic Euler algorithms |
| pmcmc | The PMCMC algorithm |
| pmcmc-class | The PMCMC algorithm |
| pmcmc-method | The PMCMC algorithm |
| pmcmc-methods | Methods of the "pmcmc" class |
| pmcmc-pfilterd.pomp | The PMCMC algorithm |
| pmcmc-pmcmc | The PMCMC algorithm |
| pmcmc-pomp | The PMCMC algorithm |
| pomp | Partially-observed Markov process object. |
| pomp-method | Partially-observed Markov process object. |
| pomp-methods | Methods of the "pomp" class |
| pomp-pomp | Partially-observed Markov process object. |
| pompBuilder | Write, compile, link, and build a pomp object using native codes |
| pompExample | Pre-built examples of pomp objects. |
| pred.mean | Methods of the "pfilterd.pomp" class |
| pred.mean-method | Methods of the "pfilterd.pomp" class |
| pred.mean-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| pred.var | Methods of the "pfilterd.pomp" class |
| pred.var-method | Methods of the "pfilterd.pomp" class |
| pred.var-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| print-method | Methods of the "pomp" class |
| print-pomp | Methods of the "pomp" class |
| probe | Probe a partially-observed Markov process. |
| probe-method | Probe a partially-observed Markov process. |
| probe-pomp | Probe a partially-observed Markov process. |
| probe-probed.pomp | Probe a partially-observed Markov process. |
| probe.acf | Some probes for partially-observed Markov processes |
| probe.ccf | Some probes for partially-observed Markov processes |
| probe.marginal | Some probes for partially-observed Markov processes |
| probe.match | Probe a partially-observed Markov process. |
| probe.match-method | Probe a partially-observed Markov process. |
| probe.match-pomp | Probe a partially-observed Markov process. |
| probe.match-probe.matched.pomp | Probe a partially-observed Markov process. |
| probe.match-probed.pomp | Probe a partially-observed Markov process. |
| probe.match.objfun | Probe a partially-observed Markov process. |
| probe.match.objfun-method | Probe a partially-observed Markov process. |
| probe.match.objfun-pomp | Probe a partially-observed Markov process. |
| probe.match.objfun-probed.pomp | Probe a partially-observed Markov process. |
| probe.matched.pomp-class | Probe a partially-observed Markov process. |
| probe.matched.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| probe.mean | Some probes for partially-observed Markov processes |
| probe.median | Some probes for partially-observed Markov processes |
| probe.nlar | Some probes for partially-observed Markov processes |
| probe.period | Some probes for partially-observed Markov processes |
| probe.quantile | Some probes for partially-observed Markov processes |
| probe.sd | Some probes for partially-observed Markov processes |
| probe.var | Some probes for partially-observed Markov processes |
| probed.pomp-class | Probe a partially-observed Markov process. |
| probed.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| profileDesign | Design matrices for likelihood profile calculations. |
| reulermultinom | Euler-multinomial death process |
| rgammawn | Euler-multinomial death process |
| ricker | Ricker model with Poisson observations. |
| rw2 | Two-dimensional random-walk process |
| sannbox | Simulated annealing with box constraints. |
| show-method | Methods of the "pomp" class |
| show-pomp | Methods of the "pomp" class |
| simulate-method | Running simulations of a partially-observed Markov process |
| simulate-pomp | Running simulations of a partially-observed Markov process |
| sliceDesign | Design matrices for likelihood slices. |
| sobol | Sobol' low-discrepancy sequence |
| sobolDesign | Sobol' low-discrepancy sequence |
| spect | Power spectrum computation for partially-observed Markov processes. |
| spect-method | Power spectrum computation for partially-observed Markov processes. |
| spect-pomp | Power spectrum computation for partially-observed Markov processes. |
| spect-spect.pomp | Power spectrum computation for partially-observed Markov processes. |
| spect.match | Power spectrum computation for partially-observed Markov processes. |
| spect.match-method | Power spectrum computation for partially-observed Markov processes. |
| spect.match-pomp | Power spectrum computation for partially-observed Markov processes. |
| spect.match-spect.pomp | Power spectrum computation for partially-observed Markov processes. |
| spect.matched.pomp-class | Power spectrum computation for partially-observed Markov processes. |
| spect.matched.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| spect.pomp-class | Power spectrum computation for partially-observed Markov processes. |
| spect.pomp-methods | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| states | Methods of the "pomp" class |
| states-method | Methods of the "pomp" class |
| states-pomp | Methods of the "pomp" class |
| summary-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| summary-method | Trajectory matching |
| summary-probe.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| summary-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| summary-spect.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| summary-spect.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| summary-traj.matched.pomp | Trajectory matching |
| time-method | Methods of the "pomp" class |
| time-pomp | Methods of the "pomp" class |
| time<- | Methods of the "pomp" class |
| time<--method | Methods of the "pomp" class |
| time<--pomp | Methods of the "pomp" class |
| timezero | Methods of the "pomp" class |
| timezero-method | Methods of the "pomp" class |
| timezero-pomp | Methods of the "pomp" class |
| timezero<- | Methods of the "pomp" class |
| timezero<--method | Methods of the "pomp" class |
| timezero<--pomp | Methods of the "pomp" class |
| traj.match | Trajectory matching |
| traj.match-method | Trajectory matching |
| traj.match-pomp | Trajectory matching |
| traj.match-traj.matched.pomp | Trajectory matching |
| traj.match.objfun | Trajectory matching |
| traj.match.objfun-method | Trajectory matching |
| traj.match.objfun-pomp | Trajectory matching |
| traj.matched.pomp-class | Trajectory matching |
| trajectory | Compute trajectories of the deterministic skeleton. |
| trajectory-method | Compute trajectories of the deterministic skeleton. |
| trajectory-pomp | Compute trajectories of the deterministic skeleton. |
| verhulst | Simple Verhulst-Pearl (logistic) model. |
| window-method | Methods of the "pomp" class |
| window-pomp | Methods of the "pomp" class |
| $-bsmcd.pomp | Liu and West Bayesian Particle Filter |
| $-method | Liu and West Bayesian Particle Filter |
| $-method | Methods of the "pfilterd.pomp" class |
| $-method | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| $-method | Trajectory matching |
| $-pfilterd.pomp | Methods of the "pfilterd.pomp" class |
| $-probe.matched.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| $-probed.pomp | Methods of the "probed.pomp", "probe.matched.pomp", "spect.pomp", and "spect.matched.pomp" classes |
| $-traj.matched.pomp | Trajectory matching |