Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures


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Documentation for package ‘netmes’ version 1.0

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evalnetworks Computing all the statistics from data of sythetic network
evalnetworksNames Computing all the statistics from data of biological network
motifcount3 Motif statistics for regulatory networks
plotDs TPR for all of the re or ac types of edges
plotMotifs Print to screen in latex format of motif statistics
readNet Fetching true network from .sif file
readSifNet Fetching true biological network from .sif file
sumdeg Sum of degree calculation for each node
TPRall TPR for all of the re or ac types of edges
visnet Plotting the inferability of a network with colored edges