Model Evaluation and Analysis

Documentation for package ‘modEvA’ version 0.2

modEvA-package	Model Evaluation and Analysis
arrangePlots	Arrange plots
AUC	Area Under the ROC Curve
Dsquared	Proportion of deviance explained by a GLM
evaluate	Evaluate a GLM based on the elements of a confusion matrix.
evenness	Evenness in a binary vector.
Fav	Favourability
FDR	False Discovery Rate
getBins	Get bins of data.
getModEqn	Get model equation
getPreds	Get model predictions
HLfit	Hosmer-Lemeshow goodness of fit
MESS	Multivariate Environmental Similarity Surfaces based on a data frame
modelTrim	Trim off non-significant variables from a model
modEvA	Model Evaluation and Analysis
modEvAmethods	Methods implemented in modEvA functions
multConvert	Multiple conversion
multGLM	Multiple GLMs
multModEv	Multiple model evaluation
OA	Overlap Analysis
optiPair	Optimize the discrimination threshold for a pair of related model evaluation measures.
optiThresh	Optimize threshold for model evaluation.
percentTestData	Percent test data
plotGLM	Plot a generalized linear model
prevalence	Prevalence
range01	Shrink or stretch a vector to make it range between 0 and 1
rotif.env	Rotifers and environmental variables on TDWG level 4 regions of the world
standard01	Standardize to 0-1
threshMeasures	Threshold-based measures of model evaluation
varPart	Variation partitioning