jointSeg-package |
Joint segmentation of multivariate (copy number) signals |
doCBS |
Run CBS segmentation |
doCnaStruct |
# Run cnaStruct segmentation |
doDynamicProgramming |
Run cghseg segmentation |
doGFLars |
Solve the group fused Lasso optimization problem using group LARS |
doPelt |
# Run Pelt segmentation, |
doPSCBS |
Run Paired PSCBS segmentation |
doPSCN |
Run PSCN segmentation (defunct) |
doRBS |
Run RBS segmentation |
estimateSd |
Robust standard deviation estimator |
getCopyNumberDataByResampling |
Generate a copy number profile by resampling input data |
getTpFp |
Calculate the number of true positives and false positives |
getTprTnr |
Calculate the proportion of true positives and true negatives |
jointSeg |
Joint segmentation of multivariate (copy number) signals |
jointseg |
Joint segmentation of multivariate signals |
modelSelection |
Model selection |
plotSeg |
Plot signal and breakpoints with segment-level signal estimates |
pruneByDP |
Exact segmentation of a multivariate signal using dynamic programming. |
PSSeg |
Parent-Specific copy number segmentation |
randomProfile |
Generate a random multi-dimensional profile with breakpoints and noise |