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A B C D E F G H I J L M N P Q R S T U V W X Y misc
| FLCore-package | Core package of FLR, fisheries modelling in R. |
| ab2sv | Stock-Recruitment models |
| ac | FLCore-internal |
| AIC-method | Akaike information criterion (AIC) method |
| apply-method | Method apply |
| areaMeans | Methods to compute sums, means and vars of FLQuant objects |
| areaMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| areaMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| areaSums | Methods to compute sums, means and vars of FLQuant objects |
| areaSums-method | Methods to compute sums, means and vars of FLQuant objects |
| areaSums-methods | Methods to compute sums, means and vars of FLQuant objects |
| areaVars | Methods to compute sums, means and vars of FLQuant objects |
| areaVars-method | Methods to compute sums, means and vars of FLQuant objects |
| areaVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| Arith-method | Arithmetic methods for FLQuant objects |
| as.data.frame-FLCore | Method as.data.frame |
| as.data.frame-method | Method as.data.frame |
| as.FLBiol | Old S3 coercion methods |
| as.FLBiol-method | Old S3 coercion methods |
| as.FLBiol-methods | Old S3 coercion methods |
| as.FLIndex | Old S3 coercion methods |
| as.FLIndex-method | Old S3 coercion methods |
| as.FLIndex-methods | Old S3 coercion methods |
| as.FLQuant | Old S3 coercion methods |
| as.FLQuant-method | Old S3 coercion methods |
| as.FLQuant-methods | Old S3 coercion methods |
| as.FLSR | Old S3 coercion methods |
| as.FLSR-method | Old S3 coercion methods |
| as.FLSR-methods | Old S3 coercion methods |
| as.FLStock | Old S3 coercion methods |
| barchart-method | Lattice plots |
| bevholt | Stock-Recruitment models |
| bevholt.ar1 | Stock-Recruitment models |
| bevholt.c.a | Stock-Recruitment models |
| bevholt.c.b | Stock-Recruitment models |
| bevholt.d | Stock-Recruitment models |
| bevholt.ndc | Stock-Recruitment models |
| Bevholt.SV | Stock-Recruitment models |
| bevholt.sv | Stock-Recruitment models |
| BIC-method | Bayesian information criterion (BIC) method |
| bkey | Generate key for bubbles plot |
| bkey-method | Generate key for bubbles plot |
| bkey-methods | Generate key for bubbles plot |
| bt4 | FLCore datasets |
| bubbles | Bubbles plot |
| bubbles-method | Bubbles plot |
| bubbles-methods | Bubbles plot |
| bwplot-method | Lattice plots |
| capacity | Accesor and replacement methods for complex S4 classes |
| capacity-method | Accesor and replacement methods for complex S4 classes |
| capacity-methods | Accesor and replacement methods for complex S4 classes |
| capacity<- | Accesor and replacement methods for complex S4 classes |
| capacity<--method | Accesor and replacement methods for complex S4 classes |
| capacity<--methods | Accesor and replacement methods for complex S4 classes |
| catch | Accesor and replacement methods for complex S4 classes |
| catch-method | Accesor and replacement methods for the FLCatch class |
| catch-method | Accesor and replacement methods for complex S4 classes |
| catch-methods | Accesor and replacement methods for complex S4 classes |
| catch.n | Accesor and replacement methods for complex S4 classes |
| catch.n-method | Class FLBiol |
| catch.n-method | Accesor and replacement methods for the FLCatch class |
| catch.n-method | Accesor and replacement methods for complex S4 classes |
| catch.n-methods | Accesor and replacement methods for complex S4 classes |
| catch.n<- | Accesor and replacement methods for complex S4 classes |
| catch.n<--method | Accesor and replacement methods for the FLCatch class |
| catch.n<--method | Accesor and replacement methods for complex S4 classes |
| catch.n<--methods | Accesor and replacement methods for complex S4 classes |
| catch.q | Accesor and replacement methods for complex S4 classes |
| catch.q-method | Accesor and replacement methods for the FLCatch class |
| catch.q-methods | Accesor and replacement methods for complex S4 classes |
| catch.q<- | Accesor and replacement methods for complex S4 classes |
| catch.q<--method | Accesor and replacement methods for the FLCatch class |
| catch.q<--methods | Accesor and replacement methods for complex S4 classes |
| catch.sel | Accesor and replacement methods for complex S4 classes |
| catch.sel-method | Accesor and replacement methods for the FLCatch class |
| catch.sel-methods | Accesor and replacement methods for complex S4 classes |
| catch.sel<- | Accesor and replacement methods for complex S4 classes |
| catch.sel<--method | Accesor and replacement methods for the FLCatch class |
| catch.sel<--methods | Accesor and replacement methods for complex S4 classes |
| catch.wt | Accesor and replacement methods for complex S4 classes |
| catch.wt-method | Accesor and replacement methods for the FLCatch class |
| catch.wt-method | Accesor and replacement methods for complex S4 classes |
| catch.wt-methods | Accesor and replacement methods for complex S4 classes |
| catch.wt<- | Accesor and replacement methods for complex S4 classes |
| catch.wt<--method | Accesor and replacement methods for the FLCatch class |
| catch.wt<--method | Accesor and replacement methods for complex S4 classes |
| catch.wt<--methods | Accesor and replacement methods for complex S4 classes |
| catch<- | Accesor and replacement methods for complex S4 classes |
| catch<--method | Accesor and replacement methods for the FLCatch class |
| catch<--method | Accesor and replacement methods for complex S4 classes |
| catch<--methods | Accesor and replacement methods for complex S4 classes |
| catches | Accesor and replacement methods for complex S4 classes |
| catches-method | Accesor and replacement methods for the FLCatch class |
| catches-methods | Accesor and replacement methods for complex S4 classes |
| catches<- | Accesor and replacement methods for complex S4 classes |
| catches<--method | Accesor and replacement methods for the FLCatch class |
| catches<--methods | Accesor and replacement methods for complex S4 classes |
| catchNames | Method catchNames |
| catchNames-method | Method catchNames |
| catchNames-methods | Method catchNames |
| ccplot | Catch-curves plot |
| ccplot-method | Catch-curves plot |
| ccplot-methods | Catch-curves plot |
| checkEqual | FLtest functions for running simple units tests |
| checkFail | FLtest functions for running simple units tests |
| checkFalse | FLtest functions for running simple units tests |
| checkIdentical | FLtest functions for running simple units tests |
| checkRun | FLtest functions for running simple units tests |
| checkTrue | FLtest functions for running simple units tests |
| coerce-method | Method as.data.frame |
| coerce-method | Method coerce |
| computeCatch | Methods to compute total catch, landings, discards and stock biomass |
| computeCatch-method | Methods to compute total catch, landings, discards and stock biomass |
| computeCatch-methods | Methods to compute total catch, landings, discards and stock biomass |
| computeDiscards | Methods to compute total catch, landings, discards and stock biomass |
| computeDiscards-method | Methods to compute total catch, landings, discards and stock biomass |
| computeDiscards-methods | Methods to compute total catch, landings, discards and stock biomass |
| computeLandings | Methods to compute total catch, landings, discards and stock biomass |
| computeLandings-method | Methods to compute total catch, landings, discards and stock biomass |
| computeLandings-methods | Methods to compute total catch, landings, discards and stock biomass |
| computeStock | Methods to compute total catch, landings, discards and stock biomass |
| computeStock-method | Methods to compute total catch, landings, discards and stock biomass |
| computeStock-methods | Methods to compute total catch, landings, discards and stock biomass |
| convert6d | FLCore-internal |
| convertFLPar | FLCore-internal |
| convertFLPar-method | FLCore-internal |
| convertFLPar-methods | FLCore-internal |
| covar | Accesor and replacement methods for complex S4 classes |
| covar-method | Accesor and replacement methods for complex S4 classes |
| covar-methods | Accesor and replacement methods for complex S4 classes |
| covar<- | Accesor and replacement methods for complex S4 classes |
| covar<--method | Accesor and replacement methods for complex S4 classes |
| covar<--methods | Accesor and replacement methods for complex S4 classes |
| createFLAccesors | Create accesor methods for a given class |
| crewshare | Accesor and replacement methods for complex S4 classes |
| crewshare-method | Accesor and replacement methods for complex S4 classes |
| crewshare-methods | Accesor and replacement methods for complex S4 classes |
| crewshare<- | Accesor and replacement methods for complex S4 classes |
| crewshare<--method | Accesor and replacement methods for complex S4 classes |
| crewshare<--methods | Accesor and replacement methods for complex S4 classes |
| cv | Coefficient of Variation of FLR objects with multiple iterations |
| cv-method | Coefficient of Variation of FLR objects with multiple iterations |
| cv-methods | Coefficient of Variation of FLR objects with multiple iterations |
| densityplot-method | Lattice plots |
| desc | Accesor and replacement methods for complex S4 classes |
| desc-method | Accesor and replacement methods for complex S4 classes |
| desc-methods | Accesor and replacement methods for complex S4 classes |
| desc<- | Accesor and replacement methods for complex S4 classes |
| desc<--method | Accesor and replacement methods for complex S4 classes |
| desc<--methods | Accesor and replacement methods for complex S4 classes |
| details | Accesor and replacement methods for complex S4 classes |
| details-method | Accesor and replacement methods for complex S4 classes |
| details-methods | Accesor and replacement methods for complex S4 classes |
| details<- | Accesor and replacement methods for complex S4 classes |
| details<--method | Accesor and replacement methods for complex S4 classes |
| details<--methods | Accesor and replacement methods for complex S4 classes |
| dimMeans | Methods to compute sums, means and vars of FLQuant objects |
| dimMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| dimMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| dimnames<--method | Modify dimnames of an FLQuant |
| dims | List with information on object dimensions |
| dims-method | List with information on object dimensions |
| dims-methods | List with information on object dimensions |
| dimSums | Methods to compute sums, means and vars of FLQuant objects |
| dimSums-method | Methods to compute sums, means and vars of FLQuant objects |
| dimSums-methods | Methods to compute sums, means and vars of FLQuant objects |
| dimVars | Methods to compute sums, means and vars of FLQuant objects |
| dimVars-method | Methods to compute sums, means and vars of FLQuant objects |
| dimVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| discards | Accesor and replacement methods for complex S4 classes |
| discards-method | Accesor and replacement methods for the FLCatch class |
| discards-method | Accesor and replacement methods for complex S4 classes |
| discards-methods | Accesor and replacement methods for complex S4 classes |
| discards.n | Accesor and replacement methods for complex S4 classes |
| discards.n-method | Accesor and replacement methods for the FLCatch class |
| discards.n-method | Accesor and replacement methods for complex S4 classes |
| discards.n-methods | Accesor and replacement methods for complex S4 classes |
| discards.n<- | Accesor and replacement methods for complex S4 classes |
| discards.n<--method | Accesor and replacement methods for the FLCatch class |
| discards.n<--method | Accesor and replacement methods for complex S4 classes |
| discards.n<--methods | Accesor and replacement methods for complex S4 classes |
| discards.q | Accesor and replacement methods for complex S4 classes |
| discards.q-method | Accesor and replacement methods for the FLCatch class |
| discards.q-methods | Accesor and replacement methods for complex S4 classes |
| discards.q<- | Accesor and replacement methods for complex S4 classes |
| discards.q<--method | Accesor and replacement methods for the FLCatch class |
| discards.q<--methods | Accesor and replacement methods for complex S4 classes |
| discards.sel | Accesor and replacement methods for complex S4 classes |
| discards.sel-method | Accesor and replacement methods for the FLCatch class |
| discards.sel-methods | Accesor and replacement methods for complex S4 classes |
| discards.sel<- | Accesor and replacement methods for complex S4 classes |
| discards.sel<--method | Accesor and replacement methods for the FLCatch class |
| discards.sel<--methods | Accesor and replacement methods for complex S4 classes |
| discards.wt | Accesor and replacement methods for complex S4 classes |
| discards.wt-method | Accesor and replacement methods for the FLCatch class |
| discards.wt-method | Accesor and replacement methods for complex S4 classes |
| discards.wt-methods | Accesor and replacement methods for complex S4 classes |
| discards.wt<- | Accesor and replacement methods for complex S4 classes |
| discards.wt<--method | Accesor and replacement methods for the FLCatch class |
| discards.wt<--method | Accesor and replacement methods for complex S4 classes |
| discards.wt<--methods | Accesor and replacement methods for complex S4 classes |
| discards<- | Accesor and replacement methods for complex S4 classes |
| discards<--method | Accesor and replacement methods for the FLCatch class |
| discards<--method | Accesor and replacement methods for complex S4 classes |
| discards<--methods | Accesor and replacement methods for complex S4 classes |
| dotplot-method | Lattice plots |
| effort | Accesor and replacement methods for complex S4 classes |
| effort-method | Accesor and replacement methods for complex S4 classes |
| effort-methods | Accesor and replacement methods for complex S4 classes |
| effort<- | Accesor and replacement methods for complex S4 classes |
| effort<--method | Accesor and replacement methods for complex S4 classes |
| effort<--methods | Accesor and replacement methods for complex S4 classes |
| effshare | Accesor and replacement methods for complex S4 classes |
| effshare-method | Accesor and replacement methods for complex S4 classes |
| effshare-methods | Accesor and replacement methods for complex S4 classes |
| effshare<- | Accesor and replacement methods for complex S4 classes |
| effshare<--method | Accesor and replacement methods for complex S4 classes |
| effshare<--methods | Accesor and replacement methods for complex S4 classes |
| expand | Trim FLR objects using named dimensions |
| expand-method | Trim FLR objects using named dimensions |
| expand-methods | Trim FLR objects using named dimensions |
| Extract-FLCore | Extract or Replace Parts of an FLR Object |
| fbar | Calculates mean harvest rate or fishing mortality |
| fbar-method | Calculates mean harvest rate or fishing mortality |
| fbar-methods | Calculates mean harvest rate or fishing mortality |
| fcost | Accesor and replacement methods for complex S4 classes |
| fcost-method | Accesor and replacement methods for complex S4 classes |
| fcost-methods | Accesor and replacement methods for complex S4 classes |
| fcost<- | Accesor and replacement methods for complex S4 classes |
| fcost<--method | Accesor and replacement methods for complex S4 classes |
| fcost<--methods | Accesor and replacement methods for complex S4 classes |
| fec | Accesor and replacement methods for complex S4 classes |
| fec-method | Accesor and replacement methods for complex S4 classes |
| fec-methods | Accesor and replacement methods for complex S4 classes |
| fec<- | Accesor and replacement methods for complex S4 classes |
| fec<--method | Accesor and replacement methods for complex S4 classes |
| fec<--methods | Accesor and replacement methods for complex S4 classes |
| finishTest | FLtest functions for running simple units tests |
| fitted-method | Accesor and replacement methods for complex S4 classes |
| fitted<- | Accesor and replacement methods for complex S4 classes |
| fitted<--method | Accesor and replacement methods for complex S4 classes |
| fitted<--methods | Accesor and replacement methods for complex S4 classes |
| FLArray | Class FLArray |
| FLArray-class | Class FLArray |
| FLBiol | Class FLBiol |
| FLBiol-class | Class FLBiol |
| FLBiol-method | Class FLBiol |
| FLBiol-methods | Class FLBiol |
| FLBiols | Class FLBiols |
| FLBiols-class | Class FLBiols |
| FLBiols-method | Class FLBiols |
| FLBiols-methods | Class FLBiols |
| flc2flq | Coerce FLCohort into FLQuant. |
| flc2flq-method | Coerce FLCohort into FLQuant. |
| flc2flq-methods | Coerce FLCohort into FLQuant. |
| FLCatch | Class FLCatch |
| FLCatch-accesors | Accesor and replacement methods for the FLCatch class |
| FLCatch-class | Class FLCatch |
| FLCatch-method | Class FLCatch |
| FLCatch-methods | Class FLCatch |
| FLCatches | Class FLCatches |
| FLCatches-class | Class FLCatches |
| FLCatches-method | Class FLCatches |
| FLCatches-methods | Class FLCatches |
| FLCohort | Class FLCohort |
| FLCohort-class | Class FLCohort |
| FLCohort-method | Class FLCohort |
| FLCohort-methods | Class FLCohort |
| FLCohorts | Class FLCohorts |
| FLCohorts-class | Class FLCohorts |
| FLCohorts-method | Class FLCohorts |
| FLCohorts-methods | Class FLCohorts |
| FLComp | Class FLComp |
| FLComp-class | Class FLComp |
| FLCore | Core package of FLR, fisheries modelling in R. |
| FLFleet | Class FLFleet |
| FLFleet-class | Class FLFleet |
| FLFleet-method | Class FLFleet |
| FLFleet-methods | Class FLFleet |
| FLFleets | Class FLFleets |
| FLFleets-class | Class FLFleets |
| FLFleets-method | Class FLFleets |
| FLFleets-methods | Class FLFleets |
| FLIndex | Class FLIndex |
| FLIndex-class | Class FLIndex |
| FLIndex-method | Class FLIndex |
| FLIndex-methods | Class FLIndex |
| FLIndices | Class FLIndices |
| FLIndices-class | Class FLIndices |
| FLIndices-method | Class FLIndices |
| FLIndices-methods | Class FLIndices |
| FLlst | Class FLlst |
| FLlst-class | Class FLlst |
| FLlst-method | Class FLlst |
| FLlst-methods | Class FLlst |
| FLMetier | Class FLMetier |
| FLMetier-class | Class FLMetier |
| FLMetier-method | Class FLMetier |
| FLMetier-methods | Class FLMetier |
| FLMetiers | Class FLMetiers |
| FLMetiers-class | Class FLMetiers |
| FLMetiers-method | Class FLMetiers |
| FLMetiers-methods | Class FLMetiers |
| FLModel | Class FLModel for statistical models |
| FLModel-class | Class FLModel for statistical models |
| FLModel-method | Class FLModel for statistical models |
| FLModel-methods | Class FLModel for statistical models |
| FLPar | Class FLPar |
| FLPar-class | Class FLPar |
| FLPar-method | Class FLPar |
| FLPar-methods | Class FLPar |
| FLQuant | FLQuant class for numerical data |
| FLQuant-class | FLQuant class for numerical data |
| FLQuant-method | FLQuant class for numerical data |
| FLQuant-methods | FLQuant class for numerical data |
| FLQuantPoint | Class FLQuantPoint |
| FLQuantPoint-accesors | Method lowq |
| FLQuantPoint-class | Class FLQuantPoint |
| FLQuantPoint-method | Class FLQuantPoint |
| FLQuantPoint-methods | Class FLQuantPoint |
| FLQuants | Class FLQuants |
| FLQuants-class | Class FLQuants |
| FLQuants-method | Class FLQuants |
| FLQuants-methods | Class FLQuants |
| FLSR | Class FLSR |
| FLSR-class | Class FLSR |
| FLSR-method | Class FLSR |
| FLSR-methods | Class FLSR |
| FLStock | Class FLStock |
| FLStock-class | Class FLStock |
| FLStock-method | Class FLStock |
| FLStock-methods | Class FLStock |
| FLStocks | Class FLStocks |
| FLStocks-class | Class FLStocks |
| FLStocks-method | Class FLStocks |
| FLStocks-methods | Class FLStocks |
| FLtest | FLtest functions for running simple units tests |
| fmle | Method fmle |
| fmle-method | Method fmle |
| gear | Accesor and replacement methods for complex S4 classes |
| gear-method | Accesor and replacement methods for complex S4 classes |
| gear-methods | Accesor and replacement methods for complex S4 classes |
| gear<- | Accesor and replacement methods for complex S4 classes |
| gear<--method | Accesor and replacement methods for complex S4 classes |
| gear<--methods | Accesor and replacement methods for complex S4 classes |
| geomean | Stock-Recruitment models |
| getPlural | FLCore-internal |
| gr | Accesor and replacement methods for complex S4 classes |
| gr-method | Accesor and replacement methods for complex S4 classes |
| gr-methods | Accesor and replacement methods for complex S4 classes |
| gr<- | Accesor and replacement methods for complex S4 classes |
| gr<--method | Accesor and replacement methods for complex S4 classes |
| gr<--methods | Accesor and replacement methods for complex S4 classes |
| harvest | Accesor and replacement methods for complex S4 classes |
| harvest-method | Accesor and replacement methods for complex S4 classes |
| harvest-method | Harvest calculations for FLBiol |
| harvest-methods | Accesor and replacement methods for complex S4 classes |
| harvest.spwn | Accesor and replacement methods for complex S4 classes |
| harvest.spwn-method | Accesor and replacement methods for complex S4 classes |
| harvest.spwn-methods | Accesor and replacement methods for complex S4 classes |
| harvest.spwn<- | Accesor and replacement methods for complex S4 classes |
| harvest.spwn<--method | Accesor and replacement methods for complex S4 classes |
| harvest.spwn<--methods | Accesor and replacement methods for complex S4 classes |
| harvest<- | Accesor and replacement methods for complex S4 classes |
| harvest<--method | Accesor and replacement methods for complex S4 classes |
| harvest<--methods | Accesor and replacement methods for complex S4 classes |
| histogram-method | Lattice plots |
| index | Accesor and replacement methods for complex S4 classes |
| index-method | Accesor and replacement methods for complex S4 classes |
| index-methods | Accesor and replacement methods for complex S4 classes |
| index.q | Accesor and replacement methods for complex S4 classes |
| index.q-method | Accesor and replacement methods for complex S4 classes |
| index.q-methods | Accesor and replacement methods for complex S4 classes |
| index.q<- | Accesor and replacement methods for complex S4 classes |
| index.q<--method | Accesor and replacement methods for complex S4 classes |
| index.q<--methods | Accesor and replacement methods for complex S4 classes |
| index.var | Accesor and replacement methods for complex S4 classes |
| index.var-method | Accesor and replacement methods for complex S4 classes |
| index.var-methods | Accesor and replacement methods for complex S4 classes |
| index.var<- | Accesor and replacement methods for complex S4 classes |
| index.var<--method | Accesor and replacement methods for complex S4 classes |
| index.var<--methods | Accesor and replacement methods for complex S4 classes |
| index<- | Accesor and replacement methods for complex S4 classes |
| index<--method | Accesor and replacement methods for complex S4 classes |
| index<--methods | Accesor and replacement methods for complex S4 classes |
| initial | Accesor and replacement methods for complex S4 classes |
| initial-method | Accesor and replacement methods for complex S4 classes |
| initial-methods | Accesor and replacement methods for complex S4 classes |
| initial<- | Accesor and replacement methods for complex S4 classes |
| initial<--method | Accesor and replacement methods for complex S4 classes |
| initial<--methods | Accesor and replacement methods for complex S4 classes |
| is.FLBiol | Methods to determine the class of a given object |
| is.FLBiols | Methods to determine the class of a given object |
| is.FLBiols-method | Methods to determine the class of a given object |
| is.FLBiols-methods | Methods to determine the class of a given object |
| is.FLCatches | Methods to determine the class of a given object |
| is.FLCatches-method | Methods to determine the class of a given object |
| is.FLCatches-methods | Methods to determine the class of a given object |
| is.FLFleets | Methods to determine the class of a given object |
| is.FLFleets-method | Methods to determine the class of a given object |
| is.FLFleets-methods | Methods to determine the class of a given object |
| is.FLIndices | Methods to determine the class of a given object |
| is.FLIndices-method | Methods to determine the class of a given object |
| is.FLIndices-methods | Methods to determine the class of a given object |
| is.FLMetiers | Methods to determine the class of a given object |
| is.FLMetiers-method | Methods to determine the class of a given object |
| is.FLMetiers-methods | Methods to determine the class of a given object |
| is.FLQuant | Methods to determine the class of a given object |
| is.FLQuants | Methods to determine the class of a given object |
| is.FLQuants-method | Methods to determine the class of a given object |
| is.FLQuants-methods | Methods to determine the class of a given object |
| is.FLStock | Methods to determine the class of a given object |
| is.FLStocks | Methods to determine the class of a given object |
| is.FLStocks-method | Methods to determine the class of a given object |
| is.FLStocks-methods | Methods to determine the class of a given object |
| iter | Select or modify iterations of an FLR object |
| iter-method | Select or modify iterations of an FLR object |
| iter-methods | Select or modify iterations of an FLR object |
| iter<- | Select or modify iterations of an FLR object |
| iter<--method | Select or modify iterations of an FLR object |
| iter<--methods | Select or modify iterations of an FLR object |
| iterMeans | Methods to compute sums, means and vars of FLQuant objects |
| iterMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| iterMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| iters | Method iters |
| iters-method | Method iters |
| iters-methods | Method iters |
| iterVars | Methods to compute sums, means and vars of FLQuant objects |
| iterVars-method | Methods to compute sums, means and vars of FLQuant objects |
| iterVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| jacknife | Jacknife resampling |
| jacknife-method | Jacknife resampling |
| jacknife-methods | Jacknife resampling |
| landings | Accesor and replacement methods for complex S4 classes |
| landings-method | Accesor and replacement methods for the FLCatch class |
| landings-method | Accesor and replacement methods for complex S4 classes |
| landings-methods | Accesor and replacement methods for complex S4 classes |
| landings.n | Accesor and replacement methods for complex S4 classes |
| landings.n-method | Accesor and replacement methods for the FLCatch class |
| landings.n-method | Accesor and replacement methods for complex S4 classes |
| landings.n-methods | Accesor and replacement methods for complex S4 classes |
| landings.n<- | Accesor and replacement methods for complex S4 classes |
| landings.n<--method | Accesor and replacement methods for the FLCatch class |
| landings.n<--method | Accesor and replacement methods for complex S4 classes |
| landings.n<--methods | Accesor and replacement methods for complex S4 classes |
| landings.q | Accesor and replacement methods for complex S4 classes |
| landings.q-method | Accesor and replacement methods for the FLCatch class |
| landings.q-methods | Accesor and replacement methods for complex S4 classes |
| landings.q<- | Accesor and replacement methods for complex S4 classes |
| landings.q<--method | Accesor and replacement methods for the FLCatch class |
| landings.q<--methods | Accesor and replacement methods for complex S4 classes |
| landings.sel | Accesor and replacement methods for complex S4 classes |
| landings.sel-method | Accesor and replacement methods for the FLCatch class |
| landings.sel-methods | Accesor and replacement methods for complex S4 classes |
| landings.sel<- | Accesor and replacement methods for complex S4 classes |
| landings.sel<--method | Accesor and replacement methods for the FLCatch class |
| landings.sel<--methods | Accesor and replacement methods for complex S4 classes |
| landings.wt | Accesor and replacement methods for complex S4 classes |
| landings.wt-method | Accesor and replacement methods for the FLCatch class |
| landings.wt-method | Accesor and replacement methods for complex S4 classes |
| landings.wt-methods | Accesor and replacement methods for complex S4 classes |
| landings.wt<- | Accesor and replacement methods for complex S4 classes |
| landings.wt<--method | Accesor and replacement methods for the FLCatch class |
| landings.wt<--method | Accesor and replacement methods for complex S4 classes |
| landings.wt<--methods | Accesor and replacement methods for complex S4 classes |
| landings<- | Accesor and replacement methods for complex S4 classes |
| landings<--method | Accesor and replacement methods for the FLCatch class |
| landings<--method | Accesor and replacement methods for complex S4 classes |
| landings<--methods | Accesor and replacement methods for complex S4 classes |
| lapply-method | Method lapply |
| lattice-FLCore | Lattice plots |
| leslie | Method for calculating Leslie matrix dynamics of an FLBiol object |
| leslie-method | Method for calculating Leslie matrix dynamics of an FLBiol object |
| leslie-methods | Method for calculating Leslie matrix dynamics of an FLBiol object |
| logl | Accesor and replacement methods for complex S4 classes |
| logl-method | Accesor and replacement methods for complex S4 classes |
| logl-methods | Accesor and replacement methods for complex S4 classes |
| logl.ar1 | Stock-Recruitment models |
| logl<- | Accesor and replacement methods for complex S4 classes |
| logl<--method | Accesor and replacement methods for complex S4 classes |
| logl<--methods | Accesor and replacement methods for complex S4 classes |
| logLik-method | Accesor and replacement methods for complex S4 classes |
| logLik<- | Accesor and replacement methods for complex S4 classes |
| logLik<--method | Accesor and replacement methods for complex S4 classes |
| logLik<--methods | Accesor and replacement methods for complex S4 classes |
| lower | Methods upper and lower |
| lower-method | Methods upper and lower |
| lower<- | Methods upper and lower |
| lower<--method | Methods upper and lower |
| lowess-method | Method lowess |
| lowq | Method lowq |
| lowq-method | Method lowq |
| lowq-methods | Method lowq |
| lowq<- | Method lowq |
| lowq<--method | Method lowq |
| lowq<--methods | Method lowq |
| m | Accesor and replacement methods for complex S4 classes |
| m-method | Accesor and replacement methods for complex S4 classes |
| m-methods | Accesor and replacement methods for complex S4 classes |
| m.spwn | Accesor and replacement methods for complex S4 classes |
| m.spwn-method | Accesor and replacement methods for complex S4 classes |
| m.spwn-methods | Accesor and replacement methods for complex S4 classes |
| m.spwn<- | Accesor and replacement methods for complex S4 classes |
| m.spwn<--method | Accesor and replacement methods for complex S4 classes |
| m.spwn<--methods | Accesor and replacement methods for complex S4 classes |
| m<- | Accesor and replacement methods for complex S4 classes |
| m<--method | Accesor and replacement methods for complex S4 classes |
| m<--methods | Accesor and replacement methods for complex S4 classes |
| mat | Accesor and replacement methods for complex S4 classes |
| mat-method | Accesor and replacement methods for complex S4 classes |
| mat-methods | Accesor and replacement methods for complex S4 classes |
| mat<- | Accesor and replacement methods for complex S4 classes |
| mat<--method | Accesor and replacement methods for complex S4 classes |
| mat<--methods | Accesor and replacement methods for complex S4 classes |
| mcf | Method mcf |
| mcf-method | Method mcf |
| mcf-methods | Method mcf |
| mean-method | Method lowq |
| mean-method | Method mean |
| mean.lifespan | Method for calculating mean lifespan, given the natural mortality |
| mean.lifespan-method | Method for calculating mean lifespan, given the natural mortality |
| mean.lifespan-methods | Method for calculating mean lifespan, given the natural mortality |
| mean<- | Method lowq |
| mean<--method | Method lowq |
| mean<--methods | Method lowq |
| median-method | Method lowq |
| median-method | Method median |
| median<- | Method lowq |
| median<--method | Method lowq |
| median<--methods | Method lowq |
| mergeFLStock | Merging FLStock objects |
| metier | Method metier |
| metier-method | Method metier |
| metier-methods | Method metier |
| metier<- | Method metier |
| metier<--method | Method metier |
| metier<--methods | Method metier |
| metiers | Accesor and replacement methods for complex S4 classes |
| metiers-method | Accesor and replacement methods for complex S4 classes |
| metiers-methods | Accesor and replacement methods for complex S4 classes |
| metiers<- | Accesor and replacement methods for complex S4 classes |
| metiers<--method | Accesor and replacement methods for complex S4 classes |
| metiers<--methods | Accesor and replacement methods for complex S4 classes |
| model | Accesor and replacement methods for complex S4 classes |
| model-method | Accesor and replacement methods for complex S4 classes |
| model-methods | Accesor and replacement methods for complex S4 classes |
| model.frame-method | Method model.frame |
| model<- | Accesor and replacement methods for complex S4 classes |
| model<--method | Accesor and replacement methods for complex S4 classes |
| model<--methods | Accesor and replacement methods for complex S4 classes |
| n | Accesor and replacement methods for complex S4 classes |
| n-method | Accesor and replacement methods for complex S4 classes |
| n-methods | Accesor and replacement methods for complex S4 classes |
| n<- | Accesor and replacement methods for complex S4 classes |
| n<--method | Accesor and replacement methods for complex S4 classes |
| n<--methods | Accesor and replacement methods for complex S4 classes |
| name | Accesor and replacement methods for complex S4 classes |
| name-method | Accesor and replacement methods for complex S4 classes |
| name-methods | Accesor and replacement methods for complex S4 classes |
| name<- | Accesor and replacement methods for complex S4 classes |
| name<--method | Accesor and replacement methods for complex S4 classes |
| name<--methods | Accesor and replacement methods for complex S4 classes |
| names-method | Method names |
| names<--method | Method names |
| nls-FLCore | Method nls |
| nls-method | Method nls |
| nsher | FLCore datasets |
| params | Accesor and replacement methods for complex S4 classes |
| params-method | Accesor and replacement methods for complex S4 classes |
| params-methods | Accesor and replacement methods for complex S4 classes |
| params<- | Accesor and replacement methods for complex S4 classes |
| params<--method | Accesor and replacement methods for complex S4 classes |
| params<--methods | Accesor and replacement methods for complex S4 classes |
| ple4 | FLCore datasets |
| ple4.biol | FLCore datasets |
| ple4.index | FLCore datasets |
| ple4.indices | FLCore datasets |
| ple4sex | FLCore datasets |
| plot-method | Method plot |
| predict-method | Method predict |
| price | Accesor and replacement methods for complex S4 classes |
| price-method | Accesor and replacement methods for the FLCatch class |
| price-methods | Accesor and replacement methods for complex S4 classes |
| price<- | Accesor and replacement methods for complex S4 classes |
| price<--method | Accesor and replacement methods for the FLCatch class |
| price<--methods | Accesor and replacement methods for complex S4 classes |
| print-method | Method print |
| propagate | Extend an FLQuant along the iter dimension |
| propagate-method | Extend an FLQuant along the iter dimension |
| propagate-methods | Extend an FLQuant along the iter dimension |
| pv | Population variability |
| pv-method | Population variability |
| pv-methods | Population variability |
| qapply | Method qapply |
| qapply-method | Method qapply |
| qapply-methods | Method qapply |
| quant | Method quant |
| quant-method | Method quant |
| quant-methods | Method quant |
| quant<- | Method quant |
| quant<--method | Method quant |
| quant<--methods | Method quant |
| quantile-method | Method quantile |
| quantMeans | Methods to compute sums, means and vars of FLQuant objects |
| quantMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| quantMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| quantSums | Methods to compute sums, means and vars of FLQuant objects |
| quantSums-method | Methods to compute sums, means and vars of FLQuant objects |
| quantSums-methods | Methods to compute sums, means and vars of FLQuant objects |
| quantTotals | Method quantTotals |
| quantTotals-method | Method quantTotals |
| quantTotals-methods | Method quantTotals |
| quantVars | Methods to compute sums, means and vars of FLQuant objects |
| quantVars-method | Methods to compute sums, means and vars of FLQuant objects |
| quantVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| r | Intrinsic rate of increase from an FLBiol object |
| r-method | Intrinsic rate of increase from an FLBiol object |
| r-methods | Intrinsic rate of increase from an FLBiol object |
| range-method | Method range |
| range-methods | Method range |
| range<- | Method range |
| range<--method | Method range |
| range<--methods | Method range |
| read.FLIndex | Input/Output of FLR objects |
| read.FLIndices | Input/Output of FLR objects |
| read.FLStock | Input/Output of FLR objects |
| readFLIndex | Input/Output of FLR objects |
| readFLIndices | Input/Output of FLR objects |
| readFLStock | Input/Output of FLR objects |
| readVPAFile | Input/Output of FLR objects |
| rec | Accesor and replacement methods for complex S4 classes |
| rec-method | Accesor and replacement methods for complex S4 classes |
| rec-methods | Accesor and replacement methods for complex S4 classes |
| rec<- | Accesor and replacement methods for complex S4 classes |
| rec<--method | Accesor and replacement methods for complex S4 classes |
| rec<--methods | Accesor and replacement methods for complex S4 classes |
| residuals-method | Accesor and replacement methods for complex S4 classes |
| residuals<- | Accesor and replacement methods for complex S4 classes |
| residuals<--method | Accesor and replacement methods for complex S4 classes |
| residuals<--methods | Accesor and replacement methods for complex S4 classes |
| revenue | Method revenue |
| revenue-method | Method revenue |
| revenue-methods | Method revenue |
| rgamma-method | Method rgamma |
| ricker | Stock-Recruitment models |
| ricker.ar1 | Stock-Recruitment models |
| ricker.c.a | Stock-Recruitment models |
| ricker.c.b | Stock-Recruitment models |
| ricker.d | Stock-Recruitment models |
| Ricker.SV | Stock-Recruitment models |
| ricker.sv | Stock-Recruitment models |
| rlnorm-method | Method rlnorm |
| rnorm-method | Method rnorm |
| rpois-method | Method rpois |
| sd-method | Standard deviation of an FLModel object |
| seasonMeans | Methods to compute sums, means and vars of FLQuant objects |
| seasonMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| seasonMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| seasonSums | Methods to compute sums, means and vars of FLQuant objects |
| seasonSums-method | Methods to compute sums, means and vars of FLQuant objects |
| seasonSums-methods | Methods to compute sums, means and vars of FLQuant objects |
| seasonVars | Methods to compute sums, means and vars of FLQuant objects |
| seasonVars-method | Methods to compute sums, means and vars of FLQuant objects |
| seasonVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| segreg | Stock-Recruitment models |
| sel.pattern | Accesor and replacement methods for complex S4 classes |
| sel.pattern-method | Accesor and replacement methods for complex S4 classes |
| sel.pattern-methods | Accesor and replacement methods for complex S4 classes |
| sel.pattern<- | Accesor and replacement methods for complex S4 classes |
| sel.pattern<--method | Accesor and replacement methods for complex S4 classes |
| sel.pattern<--methods | Accesor and replacement methods for complex S4 classes |
| setCon | FLtest functions for running simple units tests |
| setPlusGroup | Method setPlusGroup |
| setPlusGroup-method | Method setPlusGroup |
| setPlusGroup-methods | Method setPlusGroup |
| shepherd | Stock-Recruitment models |
| shepherd.ar1 | Stock-Recruitment models |
| shepherd.d | Stock-Recruitment models |
| shepherd.d.ar1 | Stock-Recruitment models |
| shepherd.ndc | Stock-Recruitment models |
| shepherd.ndc.ar1 | Stock-Recruitment models |
| show-method | Method show |
| sop | Calculates the sum of products correction |
| splom-method | Method splom |
| spp | Accesor and replacement methods for complex S4 classes |
| spp-method | Accesor and replacement methods for complex S4 classes |
| spp-methods | Accesor and replacement methods for complex S4 classes |
| spp<--method | Accesor and replacement methods for complex S4 classes |
| spp<--methods | Accesor and replacement methods for complex S4 classes |
| spr0 | Method spr0 |
| spr0-method | Method spr0 |
| spr0-methods | Method spr0 |
| spwn | Accesor and replacement methods for complex S4 classes |
| spwn-method | Accesor and replacement methods for complex S4 classes |
| spwn-methods | Accesor and replacement methods for complex S4 classes |
| spwn<- | Accesor and replacement methods for complex S4 classes |
| spwn<--method | Accesor and replacement methods for complex S4 classes |
| spwn<--methods | Accesor and replacement methods for complex S4 classes |
| sr | Stock-recruitment model function |
| SRModelName | Convenience function to identify an SR model by its formula |
| SRModels | Stock-Recruitment models |
| ssb | Method ssb |
| ssb-method | Accesor and replacement methods for complex S4 classes |
| ssb-method | Method ssb |
| ssb-methods | Method ssb |
| ssb<- | Accesor and replacement methods for complex S4 classes |
| ssb<--method | Accesor and replacement methods for complex S4 classes |
| ssb<--methods | Accesor and replacement methods for complex S4 classes |
| ssbpurec | Method ssbpurec |
| ssbpurec-method | Method ssbpurec |
| ssbpurec-methods | Method ssbpurec |
| ssn | Method ssn |
| ssn-method | Method ssn |
| ssn-methods | Method ssn |
| startTest | FLtest functions for running simple units tests |
| stock | Accesor and replacement methods for complex S4 classes |
| stock-method | Accesor and replacement methods for complex S4 classes |
| stock-methods | Accesor and replacement methods for complex S4 classes |
| stock.n | Accesor and replacement methods for complex S4 classes |
| stock.n-method | Accesor and replacement methods for complex S4 classes |
| stock.n-methods | Accesor and replacement methods for complex S4 classes |
| stock.n<- | Accesor and replacement methods for complex S4 classes |
| stock.n<--method | Accesor and replacement methods for complex S4 classes |
| stock.n<--methods | Accesor and replacement methods for complex S4 classes |
| stock.wt | Accesor and replacement methods for complex S4 classes |
| stock.wt-method | Accesor and replacement methods for complex S4 classes |
| stock.wt-methods | Accesor and replacement methods for complex S4 classes |
| stock.wt<- | Accesor and replacement methods for complex S4 classes |
| stock.wt<--method | Accesor and replacement methods for complex S4 classes |
| stock.wt<--methods | Accesor and replacement methods for complex S4 classes |
| stock<- | Accesor and replacement methods for complex S4 classes |
| stock<--method | Accesor and replacement methods for complex S4 classes |
| stock<--methods | Accesor and replacement methods for complex S4 classes |
| stripplot-method | Lattice plots |
| summary-method | Method summary |
| survprob | Calculating survival probabilties given mortality in the FLBiol object |
| survprob-method | Calculating survival probabilties given mortality in the FLBiol object |
| survprob-methods | Calculating survival probabilties given mortality in the FLBiol object |
| sv2ab | Stock-Recruitment models |
| sweep-method | Sweep out FLQuant Summaries |
| tagTest | FLtest functions for running simple units tests |
| transform-method | Transform elements of a complex FLR object |
| trim | Trim FLR objects using named dimensions |
| trim-method | Trim FLR objects using named dimensions |
| trim-methods | Trim FLR objects using named dimensions |
| type | Accesor and replacement methods for complex S4 classes |
| type-method | Accesor and replacement methods for complex S4 classes |
| type-methods | Accesor and replacement methods for complex S4 classes |
| type<- | Accesor and replacement methods for complex S4 classes |
| type<--method | Accesor and replacement methods for complex S4 classes |
| type<--methods | Accesor and replacement methods for complex S4 classes |
| unitMeans | Methods to compute sums, means and vars of FLQuant objects |
| unitMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| unitMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| units-method | units attribute for FLQuant objects |
| units<--method | units attribute for FLQuant objects |
| unitSums | Methods to compute sums, means and vars of FLQuant objects |
| unitSums-method | Methods to compute sums, means and vars of FLQuant objects |
| unitSums-methods | Methods to compute sums, means and vars of FLQuant objects |
| unitVars | Methods to compute sums, means and vars of FLQuant objects |
| unitVars-method | Methods to compute sums, means and vars of FLQuant objects |
| unitVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| update-method | Method update |
| upper | Methods upper and lower |
| upper-method | Methods upper and lower |
| upper<- | Methods upper and lower |
| upper<--method | Methods upper and lower |
| uppq | Method lowq |
| uppq-method | Method lowq |
| uppq-methods | Method lowq |
| uppq<- | Method lowq |
| uppq<--method | Method lowq |
| uppq<--methods | Method lowq |
| var-method | Method lowq |
| var-method | Variance of an FLPar |
| var<- | Method lowq |
| var<--method | Method lowq |
| var<--methods | Method lowq |
| vcost | Accesor and replacement methods for complex S4 classes |
| vcost-method | Accesor and replacement methods for complex S4 classes |
| vcost-methods | Accesor and replacement methods for complex S4 classes |
| vcost<- | Accesor and replacement methods for complex S4 classes |
| vcost<--method | Accesor and replacement methods for complex S4 classes |
| vcost<--methods | Accesor and replacement methods for complex S4 classes |
| vcov-method | Accesor and replacement methods for complex S4 classes |
| vcov<- | Accesor and replacement methods for complex S4 classes |
| vcov<--method | Accesor and replacement methods for complex S4 classes |
| vcov<--methods | Accesor and replacement methods for complex S4 classes |
| window-method | Extract time (year) windows of an FLR object |
| writeFLStock | Input/Output of FLR objects |
| wt | Accesor and replacement methods for complex S4 classes |
| wt-method | Accesor and replacement methods for complex S4 classes |
| wt-methods | Accesor and replacement methods for complex S4 classes |
| wt<- | Accesor and replacement methods for complex S4 classes |
| wt<--method | Accesor and replacement methods for complex S4 classes |
| wt<--methods | Accesor and replacement methods for complex S4 classes |
| xyplot-method | Lattice plots |
| yearMeans | Methods to compute sums, means and vars of FLQuant objects |
| yearMeans-method | Methods to compute sums, means and vars of FLQuant objects |
| yearMeans-methods | Methods to compute sums, means and vars of FLQuant objects |
| yearSums | Methods to compute sums, means and vars of FLQuant objects |
| yearSums-method | Methods to compute sums, means and vars of FLQuant objects |
| yearSums-methods | Methods to compute sums, means and vars of FLQuant objects |
| yearTotals | Method quantTotals |
| yearTotals-method | Method quantTotals |
| yearTotals-methods | Method quantTotals |
| yearVars | Methods to compute sums, means and vars of FLQuant objects |
| yearVars-method | Methods to compute sums, means and vars of FLQuant objects |
| yearVars-methods | Methods to compute sums, means and vars of FLQuant objects |
| $<--method | Extract or Replace Parts of an FLR Object |
| +-method | Merging FLStock objects |
| [-method | Extract or Replace Parts of an FLR Object |
| [<--method | Extract or Replace Parts of an FLR Object |
| [[-method | Extract or Replace Parts of an FLR Object |
| [[<--method | Extract or Replace Parts of an FLR Object |